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    trx trithorax [ Orussus abietinus ]

    Gene ID: 105699761, updated on 10-Oct-2024

    Summary

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    Gene symbol
    trx
    Gene description
    trithorax
    See related
    EnsemblRapid:LOC105699761
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Orussus abietinus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Orussoidea; Orussidae; Orussus
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See trx in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current Oabi_2.0 (GCF_000612105.2) Unplaced Scaffold NW_019396009.1 (597112..612965, complement)
    100 previous assembly Oabi_1.0 (GCF_000612105.1) Unplaced Scaffold NW_012191734.1 (643827..659674, complement)

    NW_019396009.1Genomic Context describing neighboring genes Neighboring gene GRIP and coiled-coil domain containing 88 kDa Neighboring gene Putative transcription factor capicua Neighboring gene D-beta-hydroxybutyrate dehydrogenase, mitochondrial Neighboring gene Ubiquitin-like activating enzyme 4 Neighboring gene Galactose-1-phosphate uridylyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenomics resolves the timing and pattern of insect evolution. Misof B, et al. Science, 2014 Nov 7. PMID 25378627
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K4 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase trithorax

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Orussus abietinus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Oabi_2.0

    Genomic

    1. NW_019396009.1 Reference Oabi_2.0

      Range
      597112..612965 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023434413.1 → XP_023290181.1  histone-lysine N-methyltransferase trithorax isoform X3

      Related
      XP_023290181.1, XM_023434413.1
      Conserved Domains (11) summary
      smart00317
      Location:3286 → 3407
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      PHA02030
      Location:2479 → 2571
      PHA02030; hypothetical protein
      cd15489
      Location:949 → 999
      PHD_SF; PHD finger superfamily
      cd15506
      Location:905 → 950
      PHD1_KMT2A_like; PHD finger 1 found in histone-lysine N-methyltransferase 2A (KMT2A) and 2B (KMT2B)
      cd15508
      Location:1032 → 1088
      PHD3_KMT2A_like; PHD finger 3 found in histone-lysine N-methyltransferase 2A (KMT2A) and 2B (KMT2B)
      pfam05964
      Location:1533 → 1577
      FYRN; F/Y-rich N-terminus
      pfam05965
      Location:3125 → 3205
      FYRC; F/Y rich C-terminus
      cl02596
      Location:532 → 622
      NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
      cl22851
      Location:1386 → 1490
      PHD_SF; PHD finger superfamily
      cl26464
      Location:2528 → 2822
      Atrophin-1; Atrophin-1 family
      cl28246
      Location:2885 → 3172
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

    2. XM_012425033.2 → XP_012280456.1  histone-lysine N-methyltransferase trithorax isoform X2

      Related
      XP_012280456.1, XM_012425033.2
      Conserved Domains (10) summary
      smart00317
      Location:3306 → 3427
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG2940
      Location:3287 → 3444
      SET; SET domain-containing protein (function unknown) [General function prediction only]
      cd15489
      Location:970 → 1020
      PHD_SF; PHD finger superfamily
      cd15506
      Location:926 → 971
      PHD1_KMT2A_like; PHD finger 1 found in histone-lysine N-methyltransferase 2A (KMT2A) and 2B (KMT2B)
      cd15508
      Location:1053 → 1109
      PHD3_KMT2A_like; PHD finger 3 found in histone-lysine N-methyltransferase 2A (KMT2A) and 2B (KMT2B)
      pfam05964
      Location:1555 → 1601
      FYRN; F/Y-rich N-terminus
      pfam11489
      Location:2685 → 3141
      DUF3210; Protein of unknown function (DUF3210)
      cl02596
      Location:553 → 643
      NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
      cl02651
      Location:3149 → 3226
      FYRC; F/Y rich C-terminus
      cl22851
      Location:1407 → 1511
      PHD_SF; PHD finger superfamily

    3. XM_012425032.2 → XP_012280455.1  histone-lysine N-methyltransferase trithorax isoform X1

      Related
      XP_012280455.1, XM_012425032.2
      Conserved Domains (10) summary
      smart00317
      Location:3307 → 3428
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG2940
      Location:3264 → 3445
      SET; SET domain-containing protein (function unknown) [General function prediction only]
      cd15489
      Location:970 → 1020
      PHD_SF; PHD finger superfamily
      cd15506
      Location:926 → 971
      PHD1_KMT2A_like; PHD finger 1 found in histone-lysine N-methyltransferase 2A (KMT2A) and 2B (KMT2B)
      cd15508
      Location:1053 → 1109
      PHD3_KMT2A_like; PHD finger 3 found in histone-lysine N-methyltransferase 2A (KMT2A) and 2B (KMT2B)
      pfam05964
      Location:1555 → 1601
      FYRN; F/Y-rich N-terminus
      pfam11489
      Location:2685 → 3141
      DUF3210; Protein of unknown function (DUF3210)
      cl02596
      Location:553 → 643
      NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
      cl02651
      Location:3149 → 3226
      FYRC; F/Y rich C-terminus
      cl22851
      Location:1407 → 1511
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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