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    LOC577677 forkhead transcription factor P [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 577677, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC577677
    Gene description
    forkhead transcription factor P
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
    Also known as
    FoxP
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    Genomic context

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    See LOC577677 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145612.1 (1659083..1706058)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577023.1 (1212882..1259896, complement)

    NW_022145612.1Genomic Context describing neighboring genes Neighboring gene agrin-like Neighboring gene four-domain proteases inhibitor Neighboring gene putative aldolase class 2 protein PA3430 Neighboring gene solute carrier family 25 member 3 Neighboring gene protein SSUH2 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sea urchin Forkhead gene family: phylogeny and embryonic expression. Tu Q, et al. Dev Biol, 2006 Dec 1. PMID 17081512
    2. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    forkhead box protein P1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145612.1 Reference Spur_5.0 Primary Assembly

      Range
      1659083..1706058
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011685465.2 → XP_011683767.2  forkhead box protein P1 isoform X1

      UniProtKB/TrEMBL
      A0A7M7HK86
      Conserved Domains (2) summary
      cd00059
      Location:482 → 554
      FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
      pfam16159
      Location:261 → 328
      FOXP-CC; FOXP coiled-coil domain

    2. XM_011685467.2 → XP_011683769.2  forkhead box protein P1 isoform X2

      UniProtKB/TrEMBL
      A0A7M7HPH2
      Conserved Domains (2) summary
      cd00059
      Location:481 → 553
      FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
      pfam16159
      Location:261 → 328
      FOXP-CC; FOXP coiled-coil domain

    3. XM_011685468.2 → XP_011683770.2  forkhead box protein P1 isoform X3

      UniProtKB/TrEMBL
      A0A7M7LWQ9
      Conserved Domains (2) summary
      cd00059
      Location:480 → 552
      FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
      pfam16159
      Location:259 → 326
      FOXP-CC; FOXP coiled-coil domain

    4. XM_031000141.1 → XP_030856001.1  forkhead box protein P1 isoform X6

      UniProtKB/TrEMBL
      A0A7M7PT08

    5. XM_011685469.2 → XP_011683771.2  forkhead box protein P1 isoform X4

      UniProtKB/TrEMBL
      A0A7M7HR95
      Conserved Domains (2) summary
      cd00059
      Location:482 → 554
      FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
      pfam16159
      Location:261 → 328
      FOXP-CC; FOXP coiled-coil domain

    6. XM_011685470.2 → XP_011683772.2  forkhead box protein P1 isoform X5

      UniProtKB/TrEMBL
      A0A7M7LU45
      Conserved Domains (2) summary
      cd00059
      Location:479 → 551
      FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
      pfam16159
      Location:259 → 326
      FOXP-CC; FOXP coiled-coil domain
    Nucleotide Protein
    Heading Accession and Version

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