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    LOC101861555 serine/arginine-rich splicing factor 6 [ Aplysia californica (California sea hare) ]

    Gene ID: 101861555, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101861555
    Gene description
    serine/arginine-rich splicing factor 6
    See related
    EnsemblRapid:LOC101861555
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aplysia californica
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Heterobranchia; Euthyneura; Tectipleura; Aplysiida; Aplysioidea; Aplysiidae; Aplysia
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC101861555 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current AplCal3.0 (GCF_000002075.1) Unplaced Scaffold NW_004798440.1 (101198..130886, complement)

    NW_004798440.1Genomic Context describing neighboring genes Neighboring gene macrophage-expressed gene 1 protein Neighboring gene uncharacterized LOC101862157

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004798440 Unplaced Scaffold Reference AplCal3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tumor necrosis factor receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/arginine-rich splicing factor 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Aplysia californica Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AplCal3.0 Primary Assembly

    Genomic

    1. NW_004798440.1 Reference AplCal3.0 Primary Assembly

      Range
      101198..130886 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013090190.1 → XP_012945644.1  serine/arginine-rich splicing factor 6

      Related
      XP_012945644.1, XM_013090190.1
      Conserved Domains (2) summary
      COG0724
      Location:3 → 80
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12337
      Location:4 → 73
      RRM1_SRSF4_like; RNA recognition motif 1 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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