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    Extl3 exostosin like glycosyltransferase 3 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100716129, updated on 3-Apr-2024

    Summary

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    Gene symbol
    Extl3
    Gene description
    exostosin like glycosyltransferase 3
    See related
    Ensembl:ENSCPOG00000013430
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Extl3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947507.1 (43428374..43521511, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176418.1 (66924547..67020087, complement)

    NW_026947507.1Genomic Context describing neighboring genes Neighboring gene homeobox containing 1 Neighboring gene integrator complex subunit 9 Neighboring gene small nucleolar RNA U13 Neighboring gene ragulator complex protein LAMTOR5-like Neighboring gene frizzled class receptor 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exostosin-like 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947507.1 Reference mCavPor4.1

      Range
      43428374..43521511 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013143405.3 → XP_012998859.1  exostosin-like 3

      See identical proteins and their annotated locations for XP_012998859.1

      UniProtKB/TrEMBL
      H0VNQ6
      Conserved Domains (3) summary
      pfam03016
      Location:190 → 500
      Exostosin; Exostosin family
      pfam09258
      Location:663 → 896
      Glyco_transf_64; Glycosyl transferase family 64 domain
      cl23720
      Location:86 → 150
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

    2. XM_013143404.3 → XP_012998858.1  exostosin-like 3

      See identical proteins and their annotated locations for XP_012998858.1

      UniProtKB/TrEMBL
      H0VNQ6
      Conserved Domains (3) summary
      pfam03016
      Location:190 → 500
      Exostosin; Exostosin family
      pfam09258
      Location:663 → 896
      Glyco_transf_64; Glycosyl transferase family 64 domain
      cl23720
      Location:86 → 150
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

    3. XM_063234520.1 → XP_063090590.1  exostosin-like 3

      UniProtKB/TrEMBL
      H0VNQ6

    4. XM_063234522.1 → XP_063090592.1  exostosin-like 3

      UniProtKB/TrEMBL
      H0VNQ6

    5. XM_063234521.1 → XP_063090591.1  exostosin-like 3

      UniProtKB/TrEMBL
      H0VNQ6

    6. XM_005008129.4 → XP_005008186.1  exostosin-like 3

      See identical proteins and their annotated locations for XP_005008186.1

      UniProtKB/TrEMBL
      H0VNQ6
      Related
      ENSCPOP00000025883.1
      Conserved Domains (3) summary
      pfam03016
      Location:190 → 500
      Exostosin; Exostosin family
      pfam09258
      Location:663 → 896
      Glyco_transf_64; Glycosyl transferase family 64 domain
      cl23720
      Location:86 → 150
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

    7. XM_003479390.5 → XP_003479438.1  exostosin-like 3

      See identical proteins and their annotated locations for XP_003479438.1

      UniProtKB/TrEMBL
      H0VNQ6
      Related
      ENSCPOP00000012092.3
      Conserved Domains (3) summary
      pfam03016
      Location:190 → 500
      Exostosin; Exostosin family
      pfam09258
      Location:663 → 896
      Glyco_transf_64; Glycosyl transferase family 64 domain
      cl23720
      Location:86 → 150
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

    8. XM_063234523.1 → XP_063090593.1  exostosin-like 3

      UniProtKB/TrEMBL
      H0VNQ6
    Nucleotide Protein
    Heading Accession and Version

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