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    LOC106171150 EF-hand calcium-binding domain-containing protein 5 [ Lingula anatina ]

    Gene ID: 106171150, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC106171150
    Gene description
    EF-hand calcium-binding domain-containing protein 5
    See related
    EnsemblRapid:LOC106171150
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lingula anatina
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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    Genomic context

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    See LOC106171150 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775802.1 (242484..253228)
    100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013579555.1 (242484..253228)

    NW_019775802.1Genomic Context describing neighboring genes Neighboring gene meiotic nuclear division protein 1 homolog Neighboring gene importin subunit alpha-8-like Neighboring gene protein phosphatase Slingshot homolog 2 Neighboring gene splicing factor, arginine/serine-rich 15 Neighboring gene probable helicase with zinc finger domain

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization. Luo YJ, et al. Nat Commun, 2015 Sep 18. PMID 26383154, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    EF-hand calcium-binding domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LinAna2.0 Primary Assembly

    Genomic

    1. NW_019775802.1 Reference LinAna2.0 Primary Assembly

      Range
      242484..253228
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013551311.1 → XP_013406765.1  EF-hand calcium-binding domain-containing protein 5 isoform X1

      UniProtKB/TrEMBL
      A0A1S3J8P0
      Related
      XP_013406765.1, XM_013551311.1
      Conserved Domains (6) summary
      pfam05186
      Location:111 → 165
      Dpy-30; Dpy-30 motif
      pfam05466
      Location:484 → 695
      BASP1; Brain acid soluble protein 1 (BASP1 protein)
      pfam09755
      Location:63 → 237
      DUF2046; Uncharacterized conserved protein H4 (DUF2046)
      pfam13499
      Location:817 → 875
      EF-hand_7; EF-hand domain pair
      cl08302
      Location:818 → 876
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cl21515
      Location:1005 → 1086
      GAF; GAF domain

    2. XM_013551312.1 → XP_013406766.1  EF-hand calcium-binding domain-containing protein 5 isoform X2

      UniProtKB/TrEMBL
      A0A1S3J970
      Related
      XP_013406766.1, XM_013551312.1
      Conserved Domains (5) summary
      COG1390
      Location:196 → 310
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      pfam05186
      Location:111 → 165
      Dpy-30; Dpy-30 motif
      pfam09755
      Location:63 → 237
      DUF2046; Uncharacterized conserved protein H4 (DUF2046)
      cl08302
      Location:567 → 625
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cl21515
      Location:754 → 835
      GAF; GAF domain
    Nucleotide Protein
    Heading Accession and Version

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