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    LOC106174883 uncharacterized LOC106174883 [ Lingula anatina ]

    Gene ID: 106174883, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC106174883
    Gene description
    uncharacterized LOC106174883
    See related
    EnsemblRapid:LOC106174883
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lingula anatina
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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    Genomic context

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    See LOC106174883 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775524.1 (1401437..1437674, complement)
    100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013580496.1 (952217..988454, complement)

    NW_019775524.1Genomic Context describing neighboring genes Neighboring gene rho-associated protein kinase 2-like Neighboring gene rho-associated protein kinase 2-like Neighboring gene E3 ubiquitin-protein ligase TRIM71-like Neighboring gene DNA-binding protein RFX2 Neighboring gene nucleoporin NDC1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization. Luo YJ, et al. Nat Commun, 2015 Sep 18. PMID 26383154, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neurotransmitter receptor transport postsynaptic membrane to endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neurotransmitter receptor transport, endosome to postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic density IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC106174883

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LinAna2.0 Primary Assembly

    Genomic

    1. NW_019775524.1 Reference LinAna2.0 Primary Assembly

      Range
      1401437..1437674 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013556642.1 → XP_013412096.1  uncharacterized protein LOC106174883 isoform X5

      UniProtKB/TrEMBL
      A0A1S3JPN6
      Related
      XP_013412096.1, XM_013556642.1
      Conserved Domains (5) summary
      cd00116
      Location:154 → 389
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      cd00992
      Location:1541 → 1623
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:18 → 41
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:65 → 103
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:40 → 98
      LRR_8; Leucine rich repeat

    2. XM_013556640.1 → XP_013412094.1  uncharacterized protein LOC106174883 isoform X3

      UniProtKB/TrEMBL
      A0A1S3JQ65
      Related
      XP_013412094.1, XM_013556640.1
      Conserved Domains (5) summary
      cd00116
      Location:182 → 417
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      cd00992
      Location:1569 → 1651
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:46 → 69
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:93 → 131
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:68 → 126
      LRR_8; Leucine rich repeat

    3. XM_013556639.1 → XP_013412093.1  uncharacterized protein LOC106174883 isoform X2

      UniProtKB/TrEMBL
      A0A1S3JQ65
      Related
      XP_013412093.1, XM_013556639.1
      Conserved Domains (5) summary
      cd00116
      Location:182 → 417
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      cd00992
      Location:1569 → 1651
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:46 → 69
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:93 → 131
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:68 → 126
      LRR_8; Leucine rich repeat

    4. XM_013556648.1 → XP_013412102.1  uncharacterized protein LOC106174883 isoform X6

      UniProtKB/TrEMBL
      A0A1S3JP29
      Related
      XP_013412102.1, XM_013556648.1
      Conserved Domains (5) summary
      cd00116
      Location:182 → 417
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      cd00992
      Location:1519 → 1601
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:46 → 69
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:93 → 131
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:68 → 126
      LRR_8; Leucine rich repeat

    5. XM_013556638.1 → XP_013412092.1  uncharacterized protein LOC106174883 isoform X1

      UniProtKB/TrEMBL
      A0A1S3JQ65
      Related
      XP_013412092.1, XM_013556638.1
      Conserved Domains (5) summary
      cd00116
      Location:182 → 417
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      cd00992
      Location:1569 → 1651
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:46 → 69
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:93 → 131
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:68 → 126
      LRR_8; Leucine rich repeat

    6. XM_013556641.1 → XP_013412095.1  uncharacterized protein LOC106174883 isoform X4

      UniProtKB/TrEMBL
      A0A1S3JP01
      Related
      XP_013412095.1, XM_013556641.1
      Conserved Domains (5) summary
      cd00116
      Location:182 → 417
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      cd00992
      Location:1562 → 1644
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:46 → 69
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:93 → 131
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:68 → 126
      LRR_8; Leucine rich repeat

    7. XM_013556647.1 → XP_013412101.1  uncharacterized protein LOC106174883 isoform X5

      UniProtKB/TrEMBL
      A0A1S3JPN6
      Related
      XP_013412101.1, XM_013556647.1
      Conserved Domains (5) summary
      cd00116
      Location:154 → 389
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      cd00992
      Location:1541 → 1623
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:18 → 41
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:65 → 103
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:40 → 98
      LRR_8; Leucine rich repeat

    8. XM_013556646.1 → XP_013412100.1  uncharacterized protein LOC106174883 isoform X5

      UniProtKB/TrEMBL
      A0A1S3JPN6
      Related
      XP_013412100.1, XM_013556646.1
      Conserved Domains (5) summary
      cd00116
      Location:154 → 389
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      cd00992
      Location:1541 → 1623
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:18 → 41
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:65 → 103
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:40 → 98
      LRR_8; Leucine rich repeat

    9. XM_013556644.1 → XP_013412098.1  uncharacterized protein LOC106174883 isoform X5

      UniProtKB/TrEMBL
      A0A1S3JPN6
      Related
      XP_013412098.1, XM_013556644.1
      Conserved Domains (5) summary
      cd00116
      Location:154 → 389
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      cd00992
      Location:1541 → 1623
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:18 → 41
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:65 → 103
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:40 → 98
      LRR_8; Leucine rich repeat

    10. XM_013556643.1 → XP_013412097.1  uncharacterized protein LOC106174883 isoform X5

      UniProtKB/TrEMBL
      A0A1S3JPN6
      Related
      XP_013412097.1, XM_013556643.1
      Conserved Domains (5) summary
      cd00116
      Location:154 → 389
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      cd00992
      Location:1541 → 1623
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      sd00033
      Location:18 → 41
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:65 → 103
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:40 → 98
      LRR_8; Leucine rich repeat
    Nucleotide Protein
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