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    BNAC08G40480D transcription factor HRS1 [ Brassica napus (rape) ]

    Gene ID: 106413601, updated on 30-Nov-2023

    Summary

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    Gene symbol
    BNAC08G40480D
    Gene description
    transcription factor HRS1
    Locus tag
    HID58_083514
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica napus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See BNAC08G40480D in Genome Data Viewer
    Location:
    chromosome: C8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current Da-Ae (GCF_020379485.1) C8 NC_063451.1 (46452293..46454189, complement)
    101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C8 NC_027774.2 (42534403..42535984, complement)

    Chromosome C8 - NC_063451.1Genomic Context describing neighboring genes Neighboring gene uncharacterized BNAC08G40450D Neighboring gene methionine aminopeptidase 1B, chloroplastic-like Neighboring gene uncharacterized LOC106414944 Neighboring gene uncharacterized LOC106413604

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor HRS1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Da-Ae Primary Assembly

    Genomic

    1. NC_063451.1 Reference Da-Ae Primary Assembly

      Range
      46452293..46454189 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013854349.3 → XP_013709803.1  transcription factor HRS1

      UniProtKB/TrEMBL
      A0A078FNR9
      Conserved Domains (1) summary
      TIGR01557
      Location:186 → 242
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    Nucleotide Protein
    Heading Accession and Version

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