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    LOC116300424 nuclear factor NF-kappa-B p105 subunit-like [ Actinia tenebrosa (Australian red waratah sea anemone) ]

    Gene ID: 116300424, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC116300424
    Gene description
    nuclear factor NF-kappa-B p105 subunit-like
    See related
    EnsemblRapid:LOC116300424
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Actinia tenebrosa
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Actiniidae; Actinia
    Also known as
    NFKB
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    Genomic context

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    See LOC116300424 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    100 current ASM960242v1 (GCF_009602425.1) Unplaced Scaffold NW_022261383.1 (43200..57805, complement)

    NW_022261383.1Genomic Context describing neighboring genes Neighboring gene histamine N-methyltransferase-like Neighboring gene octopamine receptor beta-2R-like Neighboring gene rap guanine nucleotide exchange factor 6-like Neighboring gene uncharacterized LOC116300412 Neighboring gene uncharacterized LOC116300411

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022261383 Unplaced Scaffold Reference ASM960242v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Insights into the innate immunome of actiniarians using a comparative genomic approach. van der Burg CA, et al. BMC Genomics, 2016 Nov 2. PMID 27806695, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in non-canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to cytokine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear factor NF-kappa-B p105 subunit-like
    Names
    NF-kappa B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Actinia tenebrosa Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM960242v1 Primary Assembly

    Genomic

    1. NW_022261383.1 Reference ASM960242v1 Primary Assembly

      Range
      43200..57805 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031709296.1 → XP_031565156.1  nuclear factor NF-kappa-B p105 subunit-like

      UniProtKB/TrEMBL
      A0A1D6XRP9, A0A6P8ICB3
      Related
      XP_031565156.1, XM_031709296.1
      Conserved Domains (6) summary
      COG0666
      Location:574 → 728
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:619 → 650
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:550 → 650
      Ank_2; Ankyrin repeats (3 copies)
      pfam16179
      Location:274 → 375
      RHD_dimer; Rel homology dimerization domain
      cl08275
      Location:43 → 266
      RHD-n; N-terminal sub-domain of the Rel homology domain (RHD)
      cl39094
      Location:491 → 576
      Ank_2; Ankyrin repeats (3 copies)

    2. XM_031709297.1 → XP_031565157.1  nuclear factor NF-kappa-B p105 subunit-like

      UniProtKB/TrEMBL
      A0A1D6XRP9, A0A6P8ICB3
      Related
      XP_031565157.1, XM_031709297.1
      Conserved Domains (6) summary
      COG0666
      Location:574 → 728
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:619 → 650
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:550 → 650
      Ank_2; Ankyrin repeats (3 copies)
      pfam16179
      Location:274 → 375
      RHD_dimer; Rel homology dimerization domain
      cl08275
      Location:43 → 266
      RHD-n; N-terminal sub-domain of the Rel homology domain (RHD)
      cl39094
      Location:491 → 576
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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