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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001316727.1 → NP_001303656.1 receptor-type tyrosine-protein phosphatase beta precursor
Status: VALIDATED
- Source sequence(s)
-
CABZ01062511, CABZ01062520, CN502295, DT078862, EH569174, LO018023, LO018024
- UniProtKB/TrEMBL
- A0A0R4ITJ9, A0A1L1QZQ6, A0A8M1P743
- Related
- ENSDARP00000143178.1, ENSDART00000174199.2
- Conserved Domains (4) summary
-
- cd00047
Location:1637 → 1867
- PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
- cd00063
Location:113 → 199
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:823 → 896
- fn3; Fibronectin type III domain
- cl21522
Location:1001 → 1081
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCz11 Primary Assembly
Genomic
-
NC_007115.7 Reference GRCz11 Primary Assembly
- Range
-
74271064..74367949 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_009299538.3 → XP_009297813.1 receptor-type tyrosine-protein phosphatase beta isoform X2
- UniProtKB/TrEMBL
-
A0A8M3B8C0
- Conserved Domains (3) summary
-
- smart00194
Location:1521 → 1779
- PTPc; Protein tyrosine phosphatase, catalytic domain
- cd00047
Location:1549 → 1779
- PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
- pfam00041
Location:292 → 365
- fn3; Fibronectin type III domain
-
XM_021474898.2 → XP_021330573.1 receptor-type tyrosine-protein phosphatase beta isoform X1
- UniProtKB/TrEMBL
- A0A0R4ITJ9, A0A1L1QZQ6, A0A8M1P743
- Conserved Domains (4) summary
-
- cd00047
Location:1637 → 1867
- PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
- cd00063
Location:113 → 199
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:823 → 896
- fn3; Fibronectin type III domain
- cl21522
Location:1001 → 1081
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
-
XM_021474899.2 → XP_021330574.1 receptor-type tyrosine-protein phosphatase beta isoform X1
- UniProtKB/TrEMBL
- A0A0R4ITJ9, A0A1L1QZQ6, A0A8M1P743
- Conserved Domains (4) summary
-
- cd00047
Location:1637 → 1867
- PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
- cd00063
Location:113 → 199
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- pfam00041
Location:823 → 896
- fn3; Fibronectin type III domain
- cl21522
Location:1001 → 1081
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001199134.1: Suppressed sequence
- Description
- NM_001199134.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from frog (X.tr): ptprb (GeneID:100192375).