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    LOC116922298 plexin-A4 [ Daphnia magna ]

    Gene ID: 116922298, updated on 1-Jul-2024

    Summary

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    Gene symbol
    LOC116922298
    Gene description
    plexin-A4
    See related
    EnsemblRapid:LOC116922298
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Daphnia magna
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC116922298 in Genome Data Viewer
    Location:
    chromosome: LG5
    Exon count:
    15
    Annotation release Status Assembly LG Location
    101 current ASM2063170v1.1 (GCF_020631705.1) LG5 NC_059186.1 (2487985..2502030, complement)
    100 previous assembly ASM399081v1 (GCF_003990815.1) LG5 NC_046178.1 (3814409..3828822)

    Linkage Group LG5 - NC_059186.1Genomic Context describing neighboring genes Neighboring gene keratin, type II cytoskeletal 4-like Neighboring gene uncharacterized LOC123472278 Neighboring gene uncharacterized LOC116922387 Neighboring gene N-acetylglucosamine-6-sulfatase Neighboring gene 39S ribosomal protein L52, mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in motor neuron axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sensory neuron axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of semaphorin receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plexin-A4
    Names
    Plexin A4, B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Daphnia magna Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2063170v1.1 Primary Assembly

    Genomic

    1. NC_059186.1 Reference ASM2063170v1.1 Primary Assembly

      Range
      2487985..2502030 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045174255.1 → XP_045030190.1  plexin-A4

      UniProtKB/TrEMBL
      A0A0P6EDT8
      Related
      XP_045030190.1, XM_045174255.1
    Nucleotide Protein
    Heading Accession and Version

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