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    ADAR adenosine deaminase RNA specific [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102360746, updated on 29-Apr-2024

    Summary

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    Gene symbol
    ADAR
    Gene description
    adenosine deaminase RNA specific
    See related
    Ensembl:ENSLACG00000015329
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Orthologs
    human zebrafish all
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    Genomic context

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    See ADAR in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 6 NC_088144.1 (116399188..116453793)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819325.1 (1233282..1286971, complement)

    Chromosome 6 - NC_088144.1Genomic Context describing neighboring genes Neighboring gene phosphomevalonate kinase Neighboring gene small conductance calcium-activated potassium channel protein 3-like Neighboring gene 5S ribosomal RNA Neighboring gene cholinergic receptor, nicotinic, beta 2 Neighboring gene ubiquitin-conjugating enzyme E2 Q1 Neighboring gene 5S ribosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded RNA adenosine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA-specific adenosine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in adenosine to inosine editing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    double-stranded RNA-specific adenosine deaminase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088144.1 Reference fLatCha1.pri

      Range
      116399188..116453793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014488654.2 → XP_014344140.1  double-stranded RNA-specific adenosine deaminase

      UniProtKB/TrEMBL
      H3B681, M3XGS0
    Nucleotide Protein
    Heading Accession and Version

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