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    ysaB putative lipoprotein YsaB [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 1450292, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ysaB
    Official Full Name
    putative lipoprotein YsaB
    Primary source
    ECOCYC:G0-10467
    Locus tag
    b4553
    See related
    ASAP:ABE-0285074
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3549
    Summary
    First 17 aa are predicted to be a type II signal peptide, but there is no charged residue. [More information is available at EcoGene: EG14400].
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    Genomic context

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    Sequence:
    NC_000913.3 (3725413..3725712, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene glycine--tRNA ligase subunit beta Neighboring gene glycine--tRNA ligase subunit alpha Neighboring gene O-acetyltransferase WecH Neighboring gene PF05360 family inner membrane protein YiaA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    2. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative lipoprotein YsaB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3725413..3725712 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_588469.1 putative lipoprotein YsaB [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for YP_588469.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T5YNQ9
      Conserved Domains (1) summary
      pfam13983
      Location:25 → 99
      YsaB; YsaB-like lipoprotein
    Nucleotide Protein
    Heading Accession and Version

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