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    CPB2 carboxypeptidase B2 [ Alligator mississippiensis (American alligator) ]

    Gene ID: 102562517, updated on 8-May-2024

    Summary

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    Gene symbol
    CPB2
    Gene description
    carboxypeptidase B2
    Locus tag
    Y1Q_0004593
    See related
    EnsemblRapid:ENSAMIG00015013759
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator mississippiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Orthologs
    human mouse all
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    Genomic context

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    See CPB2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_09 current rAllMis1 (GCF_030867095.1) 1 NC_081824.1 (411743519..411781873, complement)
    102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017713569.1 (2720298..2749512)

    Chromosome 1 - NC_081824.1Genomic Context describing neighboring genes Neighboring gene siah E3 ubiquitin protein ligase family member 3 Neighboring gene U1 spliceosomal RNA Neighboring gene zinc finger CCCH-type containing 13 Neighboring gene lymphocyte cytosolic protein 1 Neighboring gene leucine rich repeat containing 63

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metallocarboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fibrinolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carboxypeptidase B2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAllMis1 Primary Assembly

    Genomic

    1. NC_081824.1 Reference rAllMis1 Primary Assembly

      Range
      411743519..411781873 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014608367.3 → XP_014463853.1  carboxypeptidase B2

      UniProtKB/TrEMBL
      A0A151MHY8
      Related
      ENSAMIP00015017945.1, ENSAMIT00015025695.1
      Conserved Domains (2) summary
      pfam02244
      Location:32 → 103
      Propep_M14; Carboxypeptidase activation peptide
      cl11393
      Location:118 → 421
      Peptidase_M14_like; M14 family of metallocarboxypeptidases and related proteins
    Nucleotide Protein
    Heading Accession and Version

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