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    TMTC4 transmembrane and tetratricopeptide repeat containing 4 [ Gallus gallus (chicken) ]

    Gene ID: 418772, updated on 17-Aug-2024

    Summary

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    Symbol
    TMTC4provided by CGNC
    Full Name
    transmembrane and tetratricopeptide repeat containing 4provided by CGNC
    Primary source
    CGNC:12662
    See related
    Ensembl:ENSGALG00010005236
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See TMTC4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (143907844..143964893)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (143898961..143955984)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene sodium leak channel, non-selective Neighboring gene uncharacterized LOC124417477 Neighboring gene gamma-glutamylamine cyclotransferase Neighboring gene propionyl-CoA carboxylase alpha subunit

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. Hubbard SJ, et al. Genome Res, 2005 Jan. PMID 15590942, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mannosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum unfolded protein response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein O-linked mannosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein O-mannosyl-transferase TMTC4
    XP_015130457.1
    XP_015130461.1
    XP_040513628.1
    XP_040513629.1
    XP_040513631.1
    XP_416968.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      143907844..143964893
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015274971.4 → XP_015130457.1  protein O-mannosyl-transferase TMTC4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XMA6, F1P0M3
      Conserved Domains (3) summary
      COG0457
      Location:479 → 715
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:480 → 508
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:292 → 364
      DUF1736; Domain of unknown function (DUF1736)

    2. XM_416968.8 → XP_416968.4  protein O-mannosyl-transferase TMTC4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XMA6, F1P0M3
      Related
      ENSGALP00010006952.1, ENSGALT00010012388.1
      Conserved Domains (3) summary
      COG0457
      Location:479 → 715
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:480 → 508
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:292 → 364
      DUF1736; Domain of unknown function (DUF1736)

    3. XM_015274975.4 → XP_015130461.1  protein O-mannosyl-transferase TMTC4 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XFN4, A0A8V0XQ22
      Related
      ENSGALP00010006951.1, ENSGALT00010012387.1
      Conserved Domains (3) summary
      COG0457
      Location:479 → 668
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:480 → 508
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:292 → 364
      DUF1736; Domain of unknown function (DUF1736)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      143898961..143955984
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040657695.2 → XP_040513629.1  protein O-mannosyl-transferase TMTC4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XMA6, F1P0M3
      Conserved Domains (3) summary
      COG0457
      Location:479 → 715
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:480 → 508
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:292 → 364
      DUF1736; Domain of unknown function (DUF1736)

    2. XM_040657694.2 → XP_040513628.1  protein O-mannosyl-transferase TMTC4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XMA6, F1P0M3
      Conserved Domains (3) summary
      COG0457
      Location:479 → 715
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:480 → 508
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:292 → 364
      DUF1736; Domain of unknown function (DUF1736)

    3. XM_040657697.2 → XP_040513631.1  protein O-mannosyl-transferase TMTC4 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XFN4, A0A8V0XQ22
      Conserved Domains (3) summary
      COG0457
      Location:479 → 668
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:480 → 508
      TPR; TPR repeat [structural motif]
      pfam08409
      Location:292 → 364
      DUF1736; Domain of unknown function (DUF1736)
    Nucleotide Protein Strain
    Heading Accession and Version

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