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    GAPVD1 GTPase activating protein and VPS9 domains 1 [ Gallus gallus (chicken) ]

    Gene ID: 417095, updated on 3-Dec-2024

    Summary

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    Symbol
    GAPVD1provided by CGNC
    Full Name
    GTPase activating protein and VPS9 domains 1provided by CGNC
    Primary source
    CGNC:660
    See related
    Ensembl:ENSGALG00010027973
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See GAPVD1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 17 NC_052548.1 (10204151..10235887)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 17 NC_052589.1 (9614633..9646368)

    Chromosome 17 - NC_052548.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene Rab9 effector protein with kelch motifs Neighboring gene heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) Neighboring gene mitogen-activated protein kinase associated protein 1 Neighboring gene uncharacterized LOC112530000 Neighboring gene PBX homeobox 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endocytic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GTPase-activating protein and VPS9 domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001282210.2 → NP_001269139.1  GTPase-activating protein and VPS9 domain-containing protein 1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000308
      UniProtKB/TrEMBL
      A0A8V1ABD6, E1C268
      Related
      ENSGALP00010041535.1, ENSGALT00010067792.1
      Conserved Domains (2) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1336 → 1437
      VPS9; Vacuolar sorting protein 9 (VPS9) domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052548.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      10204151..10235887
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046901706.1 → XP_046757662.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    2. XM_046901713.1 → XP_046757669.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    3. XM_046901709.1 → XP_046757665.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    4. XM_046901707.1 → XP_046757663.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    5. XM_046901705.1 → XP_046757661.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    6. XM_046901712.1 → XP_046757668.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    7. XM_046901708.1 → XP_046757664.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    8. XM_046901716.1 → XP_046757672.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V1ABD6

    9. XM_015279395.4 → XP_015134881.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6
      Related
      ENSGALP00010041533.1, ENSGALT00010067790.1
      Conserved Domains (3) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1384 → 1485
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
      pfam18151
      Location:1273 → 1336
      DUF5601; Domain of unknown function (DUF5601)

    10. XM_046901714.1 → XP_046757670.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V1ABD6

    11. XM_015279406.4 → XP_015134892.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V1ABD6
      Conserved Domains (2) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1363 → 1464
      VPS9; Vacuolar sorting protein 9 (VPS9) domain

    12. XM_015279407.4 → XP_015134893.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V1ABD6
      Conserved Domains (2) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1357 → 1458
      VPS9; Vacuolar sorting protein 9 (VPS9) domain

    13. XM_015279408.4 → XP_015134894.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8V1ABD6, E1C268
      Conserved Domains (2) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1336 → 1437
      VPS9; Vacuolar sorting protein 9 (VPS9) domain

    14. XM_015279404.4 → XP_015134890.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6
      Conserved Domains (3) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1384 → 1485
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
      pfam18151
      Location:1273 → 1336
      DUF5601; Domain of unknown function (DUF5601)

    15. XM_046901717.1 → XP_046757673.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V1ABD6
      Related
      ENSGALP00010041534.1, ENSGALT00010067791.1

    16. XM_046901711.1 → XP_046757667.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    17. XM_040649040.2 → XP_040504974.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6
      Conserved Domains (3) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1384 → 1485
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
      pfam18151
      Location:1273 → 1336
      DUF5601; Domain of unknown function (DUF5601)

    18. XM_046901710.1 → XP_046757666.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    19. XM_040649041.2 → XP_040504975.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6
      Conserved Domains (3) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1384 → 1485
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
      pfam18151
      Location:1273 → 1336
      DUF5601; Domain of unknown function (DUF5601)

    20. XM_025156041.3 → XP_025011809.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6
      Conserved Domains (3) summary
      cd05129
      Location:84 → 449
      RasGAP_RAP6; Ras-GTPase Activating Domain of Rab5-activating protein 6
      pfam02204
      Location:1384 → 1485
      VPS9; Vacuolar sorting protein 9 (VPS9) domain
      pfam18151
      Location:1273 → 1336
      DUF5601; Domain of unknown function (DUF5601)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052589.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      9614633..9646368
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046928828.1 → XP_046784784.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    2. XM_046928836.1 → XP_046784792.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    3. XM_046928832.1 → XP_046784788.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    4. XM_046928830.1 → XP_046784786.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    5. XM_046928826.1 → XP_046784782.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    6. XM_046928835.1 → XP_046784791.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    7. XM_046928831.1 → XP_046784787.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    8. XM_046928840.1 → XP_046784796.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V1ABD6

    9. XM_046928824.1 → XP_046784780.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    10. XM_046928837.1 → XP_046784793.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V1ABD6

    11. XM_046928838.1 → XP_046784794.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V1ABD6

    12. XM_046928839.1 → XP_046784795.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V1ABD6

    13. XM_046928842.1 → XP_046784798.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8V1ABD6, E1C268

    14. XM_046928825.1 → XP_046784781.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    15. XM_046928841.1 → XP_046784797.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V1ABD6

    16. XM_046928834.1 → XP_046784790.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    17. XM_046928827.1 → XP_046784783.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    18. XM_046928833.1 → XP_046784789.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6

    19. XM_046928829.1 → XP_046784785.1  GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2TVQ8, A0A8V1ABD6
    Nucleotide Protein Strain
    Heading Accession and Version

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