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Links from Protein Clusters

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    TKL TIC-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825493, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TKL
    Official Full Name
    TIC-like protein
    Primary source
    TAIR:AT3G63180
    Locus tag
    AT3G63180
    See related
    Araport:AT3G63180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATTKL; TIC-like; TICKLE
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    Genomic context

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    See TKL in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (23336092..23340340, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene outer envelope membrane protein Neighboring gene Chalcone-flavanone isomerase family protein Neighboring gene ribosome recycling factor, chloroplast precursor Neighboring gene PATATIN-like protein 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The TOPLESS interactome: a framework for gene repression in Arabidopsis. Causier B, et al. Plant Physiol, 2012 Jan. PMID 22065421, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084865.2
    NM_116183.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of circadian rhythm IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TIC-like protein
    NP_001078334.1
    • TIC-like (TKL); EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: time for coffee (TAIR:AT3G22380.1); Has 1941 Blast hits to 1280 proteins in 240 species: Archae - 0; Bacteria - 154; Metazoa - 659; Fungi - 350; Plants - 117; Viruses - 3; Other Eukaryotes - 658 (source: NCBI BLink).
    NP_191877.2
    • TIC-like (TKL); BEST Arabidopsis thaliana protein match is: time for coffee (TAIR:AT3G22380.2); Has 2025 Blast hits to 1341 proteins in 246 species: Archae - 0; Bacteria - 158; Metazoa - 691; Fungi - 375; Plants - 123; Viruses - 3; Other Eukaryotes - 675 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23336092..23340340 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116183.4 → NP_191877.2  TIC-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191877.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7X4, A0A654FKA3, F4J0W8
      Conserved Domains (1) summary
      pfam03153
      Location:708 → 898
      TFIIA; Transcription factor IIA, alpha/beta subunit

    2. NM_001084865.2 → NP_001078334.1  TIC-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078334.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XNK9, A8MRY5
      Conserved Domains (1) summary
      pfam03153
      Location:700 → 890
      TFIIA; Transcription factor IIA, alpha/beta subunit
    Nucleotide Protein
    Heading Accession and Version

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