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    ubiquitin hydrolase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831949, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ubiquitin hydrolase
    Primary source
    TAIR:AT5G18310
    Locus tag
    AT5G18310
    See related
    Araport:AT5G18310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20L16.30; F20L16_30
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (6061298..6063372)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Aquaporin-like superfamily protein Neighboring gene ncRNA Neighboring gene NAC domain containing protein 88 Neighboring gene ARM repeat superfamily protein Neighboring gene ARM repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001343544.1
    NM_121836.4
    NM_180512.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin hydrolase
    NP_568362.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_850843.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6061298..6063372
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343543.1 → NP_001331858.1  ubiquitin hydrolase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UF68, A0A1P8BF54, A0A384L7W1

    2. NM_180512.4 → NP_850843.1  ubiquitin hydrolase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850843.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G2S7, B9DGJ0

    3. NM_121836.4 → NP_568362.1  ubiquitin hydrolase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568362.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y554, Q8L9Z6

    4. NM_001343544.1 → NP_001331857.1  ubiquitin hydrolase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BF46, A0A7G2F9C5
    Nucleotide Protein
    Heading Accession and Version

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