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Links from Protein Clusters

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    IQD3 IQ-domain 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824394, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IQD3
    Official Full Name
    IQ-domain 3
    Primary source
    TAIR:AT3G52290
    Locus tag
    AT3G52290
    See related
    Araport:AT3G52290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    IQ-domain 3
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    Genomic context

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    See IQD3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (19393768..19396411)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene general transcription factor group E6 Neighboring gene tRNA-Pro Neighboring gene ATP synthase D chain Neighboring gene ABC transporter G family member 27

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The IQD Family of Calmodulin-Binding Proteins Links Calcium Signaling to Microtubules, Membrane Subdomains, and the Nucleus. Bürstenbinder K, et al. Plant Physiol, 2017 Mar. PMID 28115582, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_115089.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    colocalizes_with microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    IQ-domain 3
    NP_190797.1
    • IQ-domain 3 (IQD3); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 2 (TAIR:AT5G03040.3); Has 829 Blast hits to 818 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 5; Plants - 804; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19393768..19396411
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115089.3 → NP_190797.1  IQ-domain 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190797.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VCT8, Q9FT53
      UniProtKB/TrEMBL
      A0A384LAZ6, A0A5S9XLT1
      Conserved Domains (1) summary
      smart00015
      Location:107 → 128
      IQ; Calmodulin-binding motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FT53.1

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