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Links from Protein Clusters

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    SAUR-like auxin-responsive protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829627, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SAUR-like auxin-responsive protein family
    Primary source
    TAIR:AT4G34750
    Locus tag
    AT4G34750
    See related
    Araport:AT4G34750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11I11.5; SAUR49; SMALL AUXIN UPREGULATED RNA 49
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (16577180..16578452)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ribosome-binding factor A family protein Neighboring gene GLN phosphoribosyl pyrophosphate amidotransferase 2 Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SAUR49 Can Positively Regulate Leaf Senescence by Suppressing SSPP in Arabidopsis. Wen Z, et al. Plant Cell Physiol, 2020 Mar 1. PMID 31851355
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SAUR49 Can Positively Regulate Leaf Senescence by Suppressing SSPP in Arabidopsis.
      Title: SAUR49 Can Positively Regulate Leaf Senescence by Suppressing SSPP in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001203986.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in response to auxin IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SAUR-like auxin-responsive protein family
    NP_001190915.1
    • SAUR-like auxin-responsive protein family; FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to auxin stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT5G10990.1).
    NP_195201.1
    • SAUR-like auxin-responsive protein family; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT5G10990.1); Has 1347 Blast hits to 1333 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1346; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16577180..16578452
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119641.4 → NP_195201.1  SAUR-like auxin-responsive protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195201.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZ62, A0A654FVM5, O65694, Q6NMZ3
      Conserved Domains (1) summary
      pfam02519
      Location:13 → 98
      Auxin_inducible; Auxin responsive protein

    2. NM_001203986.2 → NP_001190915.1  SAUR-like auxin-responsive protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190915.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZ62, A0A654FVM5, O65694, Q6NMZ3
      Conserved Domains (1) summary
      pfam02519
      Location:13 → 98
      Auxin_inducible; Auxin responsive protein
    Nucleotide Protein
    Heading Accession and Version

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