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Links from Protein Clusters

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    AGP24 arabinogalactan protein 24 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834073, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGP24
    Official Full Name
    arabinogalactan protein 24
    Primary source
    TAIR:AT5G40730
    Locus tag
    AT5G40730
    See related
    Araport:AT5G40730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEIN 24; arabinogalactan protein 24; ATAGP24; MNF13.250; MNF13_250
    Summary
    Encodes an arabinogalactan-protein (AGP24).
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    Genomic context

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    See AGP24 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (16301072..16301748)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene zinc finger (C2H2 type) family protein Neighboring gene C3H4 type zinc finger protein (DUF23) Neighboring gene HAUS augmin-like complex subunit Neighboring gene FBD / Leucine Rich Repeat domains containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    2. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    3. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_123438.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    arabinogalactan protein 24
    NP_198889.1
    • arabinogalactan protein 24 (AGP24); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16301072..16301748
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123438.3 → NP_198889.1  arabinogalactan protein 24 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198889.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5PP12, Q8LE23
      UniProtKB/TrEMBL
      A0A178UD90
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5PP12.1

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