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Links from Protein Clusters

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    Stu1, putative (DUF789) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830734, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Stu1, putative (DUF789)
    Primary source
    TAIR:AT5G08360
    Locus tag
    AT5G08360
    See related
    Araport:AT5G08360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8L15.90; F8L15_90
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (2689540..2690974)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Isoprenylcysteine carboxyl methyltransferase (ICMT) family Neighboring gene Nucleotidylyl transferase superfamily protein Neighboring gene GRAM domain-containing protein / ABA-responsive protein-like protein Neighboring gene alpha-galactosidase 2 Neighboring gene alpha-galactosidase 1 Neighboring gene transmembrane protein, putative (DUF 3339)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001342997.1
    NM_120920.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Stu1, putative (DUF789)
    NP_196453.2
    • Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT5G23380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2689540..2690974
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120920.5 → NP_196453.2  Stu1, putative (DUF789) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UGX3, Q84MC6, Q9FT99
      Conserved Domains (1) summary
      pfam05623
      Location:24 → 164
      DUF789; Protein of unknown function (DUF789)

    2. NM_001342997.1 → NP_001331752.1  Stu1, putative (DUF789) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BET8
    Nucleotide Protein
    Heading Accession and Version

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