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    EXPA10 expansin A10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839218, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EXPA10
    Official Full Name
    expansin A10
    Primary source
    TAIR:AT1G26770
    Locus tag
    AT1G26770
    See related
    Araport:AT1G26770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA EXPANSIN 10; ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1; AT-EXP10; ATEXP10; ATEXPA10; ATHEXP ALPHA 1.1; EXP10; EXPANSIN 10; expansin A10; T24P13.15; T24P13_15
    Summary
    Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
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    Genomic context

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    See EXPA10 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (9259432..9261313)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene myb domain protein 117

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Altered expression of expansin modulates leaf growth and pedicel abscission in Arabidopsis thaliana. Cho HT, et al. Proc Natl Acad Sci U S A, 2000 Aug 15. PMID 10931949, Free PMC Article
    2. Expansins are involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Wieczorek K, et al. Plant J, 2006 Oct. PMID 16942607
    3. Expansins: ever-expanding numbers and functions. Lee Y, et al. Curr Opin Plant Biol, 2001 Dec. PMID 11641069
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084130.1
    NM_102440.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of cell wall TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within plant-type cell wall loosening IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plant-type cell wall loosening NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in plant-type cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within syncytium formation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within unidimensional cell growth NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    expansin A10
    NP_001077599.1
    • expansin A10 (EXPA10); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 2216 Blast hits to 2213 proteins in 165 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 52; Plants - 2112; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
    NP_173999.1
    • expansin A10 (EXPA10); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 2216 Blast hits to 2213 proteins in 165 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 52; Plants - 2112; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9259432..9261313
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102440.4 → NP_173999.1  expansin A10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173999.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LDR9
      UniProtKB/TrEMBL
      A0A178W0M2, A0A5S9W1N2, Q8LET9
      Conserved Domains (1) summary
      PLN00050
      Location:1 → 248
      PLN00050; expansin A; Provisional

    2. NM_001084130.1 → NP_001077599.1  expansin A10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077599.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HPC1, Q8LET9
      Conserved Domains (3) summary
      PLN00050
      Location:11 → 258
      PLN00050; expansin A; Provisional
      pfam01357
      Location:169 → 239
      Pollen_allerg_1; Pollen allergen
      cl04011
      Location:71 → 156
      DPBB_1; Rare lipoprotein A (RlpA)-like double-psi beta-barrel
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LDR9.1

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