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    syngap1b synaptic Ras GTPase activating protein 1b [ Scleropages formosus (Asian bonytongue) ]

    Gene ID: 108926781, updated on 14-Mar-2024

    Summary

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    Gene symbol
    syngap1b
    Gene description
    synaptic Ras GTPase activating protein 1b
    See related
    Ensembl:ENSSFOG00015024176
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Scleropages formosus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Osteoglossidae; Scleropages
    Orthologs
    zebrafish all
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    Genomic context

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    See syngap1b in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    101 current fSclFor1.1 (GCF_900964775.1) 18 NC_041823.1 (14904176..14992662)
    100 previous assembly ASM162426v1 (GCF_001624265.1) Unplaced Scaffold NW_017371577.1 (686270..764474, complement)

    Chromosome 18 - NC_041823.1Genomic Context describing neighboring genes Neighboring gene ral guanine nucleotide dissociation stimulator-like 2 Neighboring gene PHD finger protein 1 Neighboring gene SMG5 nonsense mediated mRNA decay factor Neighboring gene progestin and adipoQ receptor family member VI

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of Ras protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ras/Rap GTPase-activating protein SynGAP-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Scleropages formosus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSclFor1.1 Primary Assembly

    Genomic

    1. NC_041823.1 Reference fSclFor1.1 Primary Assembly

      Range
      14904176..14992662
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029259888.1 → XP_029115721.1  ras/Rap GTPase-activating protein SynGAP-like isoform X5

      UniProtKB/TrEMBL
      A0A8C9V9A2
      Conserved Domains (4) summary
      cd04013
      Location:245 → 391
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:382 → 705
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:695 → 1313
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:112 → 303
      PH-like; Pleckstrin homology-like domain

    2. XM_029259886.1 → XP_029115719.1  ras/Rap GTPase-activating protein SynGAP-like isoform X3

      UniProtKB/TrEMBL
      A0A8C9SI24
      Conserved Domains (4) summary
      cd04013
      Location:204 → 350
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:341 → 664
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:71 → 262
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:654 → 1299
      DUF3498; Domain of unknown function (DUF3498)

    3. XM_018739714.2 → XP_018595230.1  ras/Rap GTPase-activating protein SynGAP-like isoform X1

      UniProtKB/TrEMBL
      A0A8C9SKT8, A0A8C9V9A2
      Related
      ENSSFOP00015037983.1, ENSSFOT00015038402.2

    4. XM_029259887.1 → XP_029115720.1  ras/Rap GTPase-activating protein SynGAP-like isoform X4

      UniProtKB/TrEMBL
      A0A8C9SI24
      Related
      ENSSFOP00015037984.1, ENSSFOT00015038403.2
      Conserved Domains (4) summary
      cd04013
      Location:245 → 391
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:382 → 705
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      pfam12004
      Location:695 → 1313
      DUF3498; Domain of unknown function (DUF3498)
      cl17171
      Location:112 → 303
      PH-like; Pleckstrin homology-like domain

    5. XM_029259890.1 → XP_029115723.1  ras/Rap GTPase-activating protein SynGAP-like isoform X7

      UniProtKB/TrEMBL
      A0A8C9V9A2
      Conserved Domains (4) summary
      cd04013
      Location:245 → 391
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:382 → 705
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:112 → 303
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:695 → 1132
      DUF3498; Domain of unknown function (DUF3498)

    6. XM_029259885.1 → XP_029115718.1  ras/Rap GTPase-activating protein SynGAP-like isoform X2

      UniProtKB/TrEMBL
      A0A8C9V9A2
      Conserved Domains (4) summary
      cd04013
      Location:242 → 388
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:379 → 702
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:109 → 300
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:692 → 1337
      DUF3498; Domain of unknown function (DUF3498)

    7. XM_029259889.1 → XP_029115722.1  ras/Rap GTPase-activating protein SynGAP-like isoform X6

      UniProtKB/TrEMBL
      A0A8C9SI24
      Related
      ENSSFOP00015052928.1, ENSSFOT00015042497.1
      Conserved Domains (4) summary
      cd04013
      Location:138 → 284
      C2_SynGAP_like; C2 domain present in Ras GTPase activating protein (GAP) family
      cd05136
      Location:275 → 598
      RasGAP_DAB2IP; Ras-GTPase Activating Domain of DAB2IP and similar proteins
      cd13375
      Location:5 → 196
      PH_SynGAP; Synaptic Ras-GTPase activating protein Pleckstrin homology (PH) domain
      pfam12004
      Location:588 → 1233
      DUF3498; Domain of unknown function (DUF3498)

    RNA

    1. XR_003798314.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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