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    PYGB glycogen phosphorylase B [ Zootoca vivipara (common lizard) ]

    Gene ID: 118083041, updated on 20-Mar-2024

    Summary

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    Gene symbol
    PYGB
    Gene description
    glycogen phosphorylase B
    See related
    EnsemblRapid:ENSZVIG00000004510
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zootoca vivipara
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Zootoca
    Orthologs
    human mouse all
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    Genomic context

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    See PYGB in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2023_10 current rZooViv1.1 (GCF_963506605.1) 3 NC_083278.1 (105212529..105252974, complement)
    100 previous assembly UG_Zviv_1 (GCF_011800845.1) Linkage Group LG3 NC_048607.1 (13549750..13587925, complement)

    Chromosome 3 - NC_083278.1Genomic Context describing neighboring genes Neighboring gene GINS complex subunit 1 Neighboring gene abhydrolase domain containing 12, lysophospholipase Neighboring gene ectonucleoside triphosphate diphosphohydrolase 6 Neighboring gene visual system homeobox 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycogen phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycogen catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycogen phosphorylase, brain form

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_963506605.1-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rZooViv1.1

    Genomic

    1. NC_083278.1 Reference rZooViv1.1

      Range
      105212529..105252974 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035111055.2 → XP_034966946.1  glycogen phosphorylase, brain form

      Related
      ENSZVIP00000005965.1
      Conserved Domains (1) summary
      cd04300
      Location:98 → 897
      GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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