U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC118897348 tumor necrosis factor receptor superfamily member 10A-like [ Balaenoptera musculus (blue whale) ]

    Gene ID: 118897348, updated on 16-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC118897348
    Gene description
    tumor necrosis factor receptor superfamily member 10A-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Balaenoptera musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC118897348 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current mBalMus1.pri.v3 (GCF_009873245.2) 6 NC_045790.1 (15198092..15239476)

    Chromosome 6 - NC_045790.1Genomic Context describing neighboring genes Neighboring gene charged multivesicular body protein 7 Neighboring gene tumor necrosis factor receptor superfamily member 10A-like Neighboring gene Rho related BTB domain containing 2 Neighboring gene uncharacterized LOC118896999

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_045790.1 Chromosome 6 Reference mBalMus1.pri.v3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables TRAIL binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in TRAIL-activated apoptotic signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    tumor necrosis factor receptor superfamily member 10A-like; tumor necrosis factor receptor superfamily member 10B-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Balaenoptera musculus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mBalMus1.pri.v3 Primary Assembly

    Genomic

    1. NC_045790.1 Reference mBalMus1.pri.v3 Primary Assembly

      Range
      15198092..15239476
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036856477.1 → XP_036712372.1  tumor necrosis factor receptor superfamily member 10A-like isoform X3

      UniProtKB/TrEMBL
      A0A8B8XR67
      Conserved Domains (3) summary
      cd08315
      Location:319 → 406
      Death_TRAILR_DR4_DR5; Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors
      cd00185
      Location:113 → 152
      TNFRSF; CRD3 [structural motif]
      cl22855
      Location:93 → 153
      TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

    2. XM_036856475.1 → XP_036712370.1  tumor necrosis factor receptor superfamily member 10B-like isoform X1

      UniProtKB/TrEMBL
      A0A8B8XYL6
      Conserved Domains (2) summary
      cd08315
      Location:357 → 444
      Death_TRAILR_DR4_DR5; Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors
      cd10580
      Location:89 → 191
      TNFRSF10; Tumor necrosis factor receptor superfamily member 10 (TNFRSF10), includes TNFRSF10A (DR4), TNFRSF10B (DR5), TNFRSF10C (DcR1) and TNFRSF10D (DcR2)

    3. XM_036856476.1 → XP_036712371.1  tumor necrosis factor receptor superfamily member 10A-like isoform X2

      UniProtKB/TrEMBL
      A0A8B8XSA5
      Conserved Domains (3) summary
      PHA03201
      Location:4 → 89
      PHA03201; uracil DNA glycosylase; Provisional
      cd08315
      Location:328 → 415
      Death_TRAILR_DR4_DR5; Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors
      cd10580
      Location:89 → 191
      TNFRSF10; Tumor necrosis factor receptor superfamily member 10 (TNFRSF10), includes TNFRSF10A (DR4), TNFRSF10B (DR5), TNFRSF10C (DcR1) and TNFRSF10D (DcR2)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases