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    LOC123429489 transcription factor NIGT1-like [ Hordeum vulgare subsp. vulgare (domesticated barley) ]

    Gene ID: 123429489, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC123429489
    Gene description
    transcription factor NIGT1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hordeum vulgare subsp. vulgare (sub-species: vulgare)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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    Genomic context

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    See LOC123429489 in Genome Data Viewer
    Location:
    chromosome: 2H
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current MorexV3_pseudomolecules_assembly (GCF_904849725.1) 2H NC_058519.1 (46174685..46176703, complement)

    Chromosome 2H - NC_058519.1Genomic Context describing neighboring genes Neighboring gene cation/calcium exchanger 1-like Neighboring gene ABC transporter C family member 10-like Neighboring gene uncharacterized LOC123425345 Neighboring gene pentatricopeptide repeat-containing protein At4g32430, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058519.1 Chromosome 2H Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries. Matsumoto T, et al. Plant Physiol, 2011 May. PMID 21415278, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor NIGT1-like
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hordeum vulgare subsp. vulgare Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Genomic

    1. NC_058519.1 Reference MorexV3_pseudomolecules_assembly Primary Assembly

      Range
      46174685..46176703 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045113515.1 → XP_044969450.1  transcription factor NIGT1-like isoform X1

      Conserved Domains (1) summary
      TIGR01557
      Location:229 → 286
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class

    2. XM_045113516.1 → XP_044969451.1  transcription factor NIGT1-like isoform X2

      UniProtKB/TrEMBL
      F2DCM1
      Conserved Domains (2) summary
      TIGR01557
      Location:229 → 285
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      PLN03162
      Location:187 → 301
      PLN03162; golden-2 like transcription factor; Provisional
    Nucleotide Protein
    Heading Accession and Version

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