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    PTSG_11367 ornithine decarboxylase [ Salpingoeca rosetta ]

    Gene ID: 16068156, updated on 14-Dec-2023

    Summary

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    Gene symbol
    PTSG_11367
    Gene description
    ornithine decarboxylase
    Locus tag
    PTSG_11367
    Gene type
    protein coding
    RNA name
    ornithine decarboxylase
    RefSeq status
    PROVISIONAL
    Organism
    Salpingoeca rosetta (strain: ATCC 50818, culture-collection: ATCC:50818)
    Lineage
    Eukaryota; Choanoflagellida; Craspedida; Salpingoecidae; Salpingoeca
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    Genomic context

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    See PTSG_11367 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_004754889.1Genomic Context describing neighboring genes Neighboring gene GDP-L-fucose synthase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene motor protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004754889.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ornithine decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in putrescine biosynthetic process from ornithine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ornithine decarboxylase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_004754889.1 Reference assembly

      Range
      1..1036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004987570.2 → XP_004987627.1  ornithine decarboxylase, partial [Salpingoeca rosetta]

      See identical proteins and their annotated locations for XP_004987627.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      F2UT71
      Conserved Domains (1) summary
      cl00261
      Location:1 → 272
      PLPDE_III; Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes
    Protein Accession Links
    GenPept Link UniProtKB Link
    EGD81330.1

    Gene LinkOut

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    Molecular Biology Databases