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    CCL3P1 C-C motif chemokine ligand 3 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 390788, updated on 10-Dec-2024

    Summary

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    Official Symbol
    CCL3P1provided by HGNC
    Official Full Name
    C-C motif chemokine ligand 3 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:10629
    See related
    MIM:609467; AllianceGenome:HGNC:10629
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CCL3L2; G0S19-3; SCYA3L2; LD78gamma
    Annotation information
    Annotation category: only annotated on alternate loci in reference assembly
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    Genomic context

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    See CCL3P1 in Genome Data Viewer
    Location:
    17q12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 (ALT_REF_LOCI_2) NT_187661.1 (237046..238108, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (37354726..37355788, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (34610311..34611373, complement)

    NT_187661.1Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:34495357-34496016 Neighboring gene TBC1 domain family member 3G Neighboring gene uncharacterized LOC124905374 Neighboring gene C-C motif chemokine ligand 3 like 1 Neighboring gene C-C motif chemokine ligand 4 like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The third human homolog of a murine gene encoding an inhibitor of stem cell proliferation is truncated and linked to a CpG island-containing upstream sequence. Russell L, et al. DNA Cell Biol, 1993 Mar. PMID 8097094
    2. Nucleotide sequence of the third cytokine LD78 gene and mapping of all three LD78 gene loci to human chromosome 17. Hirashima M, et al. DNA Seq, 1992. PMID 1296815
    3. CCL3L1 and CCL4L1 chemokine genes are located in a segmental duplication at chromosome 17q12. Modi WS. Genomics, 2004 Apr. PMID 15028295
    4. Gene copy number regulates the production of the human chemokine CCL3-L1. Townson JR, et al. Eur J Immunol, 2002 Oct. PMID 12355456

    GeneRIFs: Gene References Into Functions

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • LD78gamma pseudogene
    • chemokine (C-C motif) ligand 3 pseudogene 1
    • chemokine (C-C motif) ligand 3-like 2
    • small inducible cytokine A3-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_029353.2 

      Range
      101..1163
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 ALT_REF_LOCI_2

    Genomic

    1. NT_187661.1 Reference GRCh38.p14 ALT_REF_LOCI_2

      Range
      237046..238108 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      37354726..37355788 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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