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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_008030.1 RefSeqGene
- Range
-
5000..208038
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_737
mRNA and Protein(s)
-
NM_000093.5 → NP_000084.3 collagen alpha-1(V) chain isoform 1 preproprotein
See identical proteins and their annotated locations for NP_000084.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform 1.
- Source sequence(s)
-
AB209864, AB371583, AI190929, AL591890, BC032405, BM051019, CA446007, CB152831, CN399221, CN399265, CN484933, ES314363
- Consensus CDS
-
CCDS6982.1
- UniProtKB/Swiss-Prot
- A0A087WXW9, P20908, Q15094, Q5SUX4
- UniProtKB/TrEMBL
-
B2ZZ86
- Related
- ENSP00000360882.3, ENST00000371817.8
- Conserved Domains (3) summary
-
- pfam01391
Location:871 → 930
- Collagen; Collagen triple helix repeat (20 copies)
- smart00210
Location:39 → 230
- TSPN; Thrombospondin N-terminal -like domains
- pfam01410
Location:1610 → 1836
- COLFI; Fibrillar collagen C-terminal domain
-
NM_001278074.1 → NP_001265003.1 collagen alpha-1(V) chain isoform 2 preproprotein
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) contains an alternate in-frame exon in the 3' coding region compared to variant 1. It encodes isoform 2 which is of the same length but contains an alternate segment, compared to isoform 1. This variant is based on experimental data in PMID 22149965 and is supported by partial transcripts and RNA-seq data.
- Source sequence(s)
-
AB209864, AB371583, AI190929, AL591890, BC032405, BM051019, CA446007, CB152831, CN399198, CN399221, CN399265, CN484933, ES314363
- Consensus CDS
-
CCDS75932.1
- UniProtKB/TrEMBL
-
B2ZZ86
- Related
- ENSP00000360885.4, ENST00000371820.4
- Conserved Domains (3) summary
-
- pfam01391
Location:871 → 930
- Collagen; Collagen triple helix repeat (20 copies)
- smart00210
Location:39 → 230
- TSPN; Thrombospondin N-terminal -like domains
- pfam01410
Location:1610 → 1836
- COLFI; Fibrillar collagen C-terminal domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000009.12 Reference GRCh38.p14 Primary Assembly
- Range
-
134641803..134844843
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017014266.3 → XP_016869755.1 collagen alpha-1(V) chain isoform X1
- UniProtKB/TrEMBL
-
B2ZZ86
Alternate T2T-CHM13v2.0
Genomic
-
NC_060933.1 Alternate T2T-CHM13v2.0
- Range
-
146859174..147065950
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054361962.1 → XP_054217937.1 collagen alpha-1(V) chain isoform X1
- UniProtKB/TrEMBL
-
B2ZZ86