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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_009090.2 RefSeqGene
- Range
-
5001..37106
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_401
mRNA and Protein(s)
-
NM_001352773.2 → NP_001339702.1 junction plakoglobin
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) represents the longest transcript. Variants 1-7 encode the same protein.
- Source sequence(s)
-
AC109319
- Consensus CDS
-
CCDS11407.1
- UniProtKB/Swiss-Prot
- P14923, Q15093, Q15151, Q7L3S5, Q86W21, Q9BWC4, Q9HCX9
- UniProtKB/TrEMBL
-
A0A0S2Z487
- Conserved Domains (4) summary
-
- smart00185
Location:341 → 381
- ARM; Armadillo/beta-catenin-like repeats
- PLN03200
Location:328 → 658
- PLN03200; cellulose synthase-interactive protein; Provisional
- sd00043
Location:393 → 418
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:221 → 253
- Arm; Armadillo/beta-catenin-like repeat
-
NM_001352774.2 → NP_001339703.1 junction plakoglobin
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks alternate segments in the 5' and 3' UTR, compared to transcript variant 3. Variants 1-7 encode the same protein.
- Source sequence(s)
-
AC109319
- Consensus CDS
-
CCDS11407.1
- UniProtKB/Swiss-Prot
- P14923, Q15093, Q15151, Q7L3S5, Q86W21, Q9BWC4, Q9HCX9
- UniProtKB/TrEMBL
-
A0A0S2Z487
- Conserved Domains (4) summary
-
- smart00185
Location:341 → 381
- ARM; Armadillo/beta-catenin-like repeats
- PLN03200
Location:328 → 658
- PLN03200; cellulose synthase-interactive protein; Provisional
- sd00043
Location:393 → 418
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:221 → 253
- Arm; Armadillo/beta-catenin-like repeat
-
NM_001352775.2 → NP_001339704.1 junction plakoglobin
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks alternate segments in the 5' and 3' UTR, compared to transcript variant 3. Variants 1-7 encode the same protein.
- Source sequence(s)
-
AC109319
- Consensus CDS
-
CCDS11407.1
- UniProtKB/Swiss-Prot
- P14923, Q15093, Q15151, Q7L3S5, Q86W21, Q9BWC4, Q9HCX9
- UniProtKB/TrEMBL
-
A0A0S2Z487
- Conserved Domains (4) summary
-
- smart00185
Location:341 → 381
- ARM; Armadillo/beta-catenin-like repeats
- PLN03200
Location:328 → 658
- PLN03200; cellulose synthase-interactive protein; Provisional
- sd00043
Location:393 → 418
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:221 → 253
- Arm; Armadillo/beta-catenin-like repeat
-
NM_001352776.2 → NP_001339705.1 junction plakoglobin
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) has multiple differences in the 5' and 3' UTR, compared to transcript variant 3. Variants 1-7 encode the same protein.
- Source sequence(s)
-
AC109319
- Consensus CDS
-
CCDS11407.1
- UniProtKB/Swiss-Prot
- P14923, Q15093, Q15151, Q7L3S5, Q86W21, Q9BWC4, Q9HCX9
- UniProtKB/TrEMBL
-
A0A0S2Z487
- Conserved Domains (4) summary
-
- smart00185
Location:341 → 381
- ARM; Armadillo/beta-catenin-like repeats
- PLN03200
Location:328 → 658
- PLN03200; cellulose synthase-interactive protein; Provisional
- sd00043
Location:393 → 418
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:221 → 253
- Arm; Armadillo/beta-catenin-like repeat
-
NM_001352777.2 → NP_001339706.1 junction plakoglobin
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) has a novel exon in the 5' UTR and lacks an alternate segment in the 3' UTR, compared to transcript variant 3. Variants 1-7 encode the same protein.
- Source sequence(s)
-
AC109319
- Consensus CDS
-
CCDS11407.1
- UniProtKB/Swiss-Prot
- P14923, Q15093, Q15151, Q7L3S5, Q86W21, Q9BWC4, Q9HCX9
- UniProtKB/TrEMBL
-
A0A0S2Z487
- Conserved Domains (4) summary
-
- smart00185
Location:341 → 381
- ARM; Armadillo/beta-catenin-like repeats
- PLN03200
Location:328 → 658
- PLN03200; cellulose synthase-interactive protein; Provisional
- sd00043
Location:393 → 418
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:221 → 253
- Arm; Armadillo/beta-catenin-like repeat
-
NM_002230.4 → NP_002221.1 junction plakoglobin
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) lacks an alternate segment in the 5' UTR, compared to transcript variant 3. Variants 1-7 encode the same protein.
- Source sequence(s)
-
AC109319
- Consensus CDS
-
CCDS11407.1
- UniProtKB/Swiss-Prot
- P14923, Q15093, Q15151, Q7L3S5, Q86W21, Q9BWC4, Q9HCX9
- UniProtKB/TrEMBL
-
A0A0S2Z487
- Related
- ENSP00000377508.3, ENST00000393931.8
- Conserved Domains (4) summary
-
- smart00185
Location:341 → 381
- ARM; Armadillo/beta-catenin-like repeats
- PLN03200
Location:328 → 658
- PLN03200; cellulose synthase-interactive protein; Provisional
- sd00043
Location:393 → 418
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:221 → 253
- Arm; Armadillo/beta-catenin-like repeat
-
NM_021991.4 → NP_068831.1 junction plakoglobin
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate segment in the 3' UTR, compared to transcript variant 3. Variants 1-7 encode the same protein.
- Source sequence(s)
-
AC109319
- Consensus CDS
-
CCDS11407.1
- UniProtKB/Swiss-Prot
- P14923, Q15093, Q15151, Q7L3S5, Q86W21, Q9BWC4, Q9HCX9
- UniProtKB/TrEMBL
-
A0A0S2Z487
- Related
- ENSP00000311113.5, ENST00000310706.9
- Conserved Domains (4) summary
-
- smart00185
Location:341 → 381
- ARM; Armadillo/beta-catenin-like repeats
- PLN03200
Location:328 → 658
- PLN03200; cellulose synthase-interactive protein; Provisional
- sd00043
Location:393 → 418
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:221 → 253
- Arm; Armadillo/beta-catenin-like repeat
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000017.11 Reference GRCh38.p14 Primary Assembly
- Range
-
41754609..41786711 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047435939.1 → XP_047291895.1 junction plakoglobin isoform X2
- UniProtKB/Swiss-Prot
- P14923, Q15093, Q15151, Q7L3S5, Q86W21, Q9BWC4, Q9HCX9
- UniProtKB/TrEMBL
-
A0A0S2Z487
-
XM_047435934.1 → XP_047291890.1 junction plakoglobin isoform X1
-
XM_006721874.4 → XP_006721937.1 junction plakoglobin isoform X2
- UniProtKB/Swiss-Prot
- P14923, Q15093, Q15151, Q7L3S5, Q86W21, Q9BWC4, Q9HCX9
- UniProtKB/TrEMBL
-
A0A0S2Z487
- Conserved Domains (4) summary
-
- smart00185
Location:341 → 381
- ARM; Armadillo/beta-catenin-like repeats
- PLN03200
Location:328 → 658
- PLN03200; cellulose synthase-interactive protein; Provisional
- sd00043
Location:393 → 418
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:221 → 253
- Arm; Armadillo/beta-catenin-like repeat
-
XM_047435935.1 → XP_047291891.1 junction plakoglobin isoform X1
-
XM_006721875.2 → XP_006721938.1 junction plakoglobin isoform X2
- UniProtKB/Swiss-Prot
- P14923, Q15093, Q15151, Q7L3S5, Q86W21, Q9BWC4, Q9HCX9
- UniProtKB/TrEMBL
-
A0A0S2Z487
- Conserved Domains (4) summary
-
- smart00185
Location:341 → 381
- ARM; Armadillo/beta-catenin-like repeats
- PLN03200
Location:328 → 658
- PLN03200; cellulose synthase-interactive protein; Provisional
- sd00043
Location:393 → 418
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:221 → 253
- Arm; Armadillo/beta-catenin-like repeat
-
XM_047435942.1 → XP_047291898.1 junction plakoglobin isoform X2
- UniProtKB/Swiss-Prot
- P14923, Q15093, Q15151, Q7L3S5, Q86W21, Q9BWC4, Q9HCX9
- UniProtKB/TrEMBL
-
A0A0S2Z487
-
XM_011524758.2 → XP_011523060.1 junction plakoglobin isoform X2
- UniProtKB/Swiss-Prot
- P14923, Q15093, Q15151, Q7L3S5, Q86W21, Q9BWC4, Q9HCX9
- UniProtKB/TrEMBL
-
A0A0S2Z487
- Conserved Domains (4) summary
-
- smart00185
Location:341 → 381
- ARM; Armadillo/beta-catenin-like repeats
- PLN03200
Location:328 → 658
- PLN03200; cellulose synthase-interactive protein; Provisional
- sd00043
Location:393 → 418
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:221 → 253
- Arm; Armadillo/beta-catenin-like repeat
-
XM_047435937.1 → XP_047291893.1 junction plakoglobin isoform X1
-
XM_047435941.1 → XP_047291897.1 junction plakoglobin isoform X2
- UniProtKB/Swiss-Prot
- P14923, Q15093, Q15151, Q7L3S5, Q86W21, Q9BWC4, Q9HCX9
- UniProtKB/TrEMBL
-
A0A0S2Z487
-
XM_017024590.2 → XP_016880079.1 junction plakoglobin isoform X2
- UniProtKB/Swiss-Prot
- P14923, Q15093, Q15151, Q7L3S5, Q86W21, Q9BWC4, Q9HCX9
- UniProtKB/TrEMBL
-
A0A0S2Z487
- Conserved Domains (4) summary
-
- smart00185
Location:341 → 381
- ARM; Armadillo/beta-catenin-like repeats
- PLN03200
Location:328 → 658
- PLN03200; cellulose synthase-interactive protein; Provisional
- sd00043
Location:393 → 418
- ARM; armadillo repeat [structural motif]
- pfam00514
Location:221 → 253
- Arm; Armadillo/beta-catenin-like repeat
-
XM_047435940.1 → XP_047291896.1 junction plakoglobin isoform X2
- UniProtKB/Swiss-Prot
- P14923, Q15093, Q15151, Q7L3S5, Q86W21, Q9BWC4, Q9HCX9
- UniProtKB/TrEMBL
-
A0A0S2Z487
-
XM_047435938.1 → XP_047291894.1 junction plakoglobin isoform X2
- UniProtKB/Swiss-Prot
- P14923, Q15093, Q15151, Q7L3S5, Q86W21, Q9BWC4, Q9HCX9
- UniProtKB/TrEMBL
-
A0A0S2Z487
- Related
- ENSP00000377507.1, ENST00000393930.5
Alternate T2T-CHM13v2.0
Genomic
-
NC_060941.1 Alternate T2T-CHM13v2.0
- Range
-
42611153..42643244 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054315984.1 → XP_054171959.1 junction plakoglobin isoform X1
-
XM_054315986.1 → XP_054171961.1 junction plakoglobin isoform X2
-
XM_054315989.1 → XP_054171964.1 junction plakoglobin isoform X2
-
XM_054315988.1 → XP_054171963.1 junction plakoglobin isoform X2
-
XM_054315983.1 → XP_054171958.1 junction plakoglobin isoform X1
-
XM_054315992.1 → XP_054171967.1 junction plakoglobin isoform X2
-
XM_054315987.1 → XP_054171962.1 junction plakoglobin isoform X2
-
XM_054315985.1 → XP_054171960.1 junction plakoglobin isoform X1
-
XM_054315993.1 → XP_054171968.1 junction plakoglobin isoform X2
-
XM_054315991.1 → XP_054171966.1 junction plakoglobin isoform X2
-
XM_054315990.1 → XP_054171965.1 junction plakoglobin isoform X2