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    EBLN1 endogenous Bornavirus like nucleoprotein 1 [ Homo sapiens (human) ]

    Gene ID: 340900, updated on 10-Dec-2024

    Summary

    Official Symbol
    EBLN1provided by HGNC
    Official Full Name
    endogenous Bornavirus like nucleoprotein 1provided by HGNC
    Primary source
    HGNC:HGNC:39430
    See related
    Ensembl:ENSG00000223601 MIM:613249; AllianceGenome:HGNC:39430
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    EBLN-1
    Orthologs
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    Genomic context

    See EBLN1 in Genome Data Viewer
    Location:
    10p12.31
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (22208475..22218015, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (22227526..22237074, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (22497404..22506944, complement)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member C1 Neighboring gene RN7SK pseudogene 37 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3124 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:22292323-22292823 Neighboring gene Sharpr-MPRA regulatory region 4958 Neighboring gene nonconserved acetylation island sequence 68 enhancer Neighboring gene Sharpr-MPRA regulatory region 4688 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:22339665-22339854 Neighboring gene MPRA-validated peak904 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:22417997-22418608 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2200 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3127 Neighboring gene MPRA-validated peak905 silencer Neighboring gene MPRA-validated peak906 silencer Neighboring gene adiponectin receptor 1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2201 Neighboring gene tRNA-Asn (anticodon GTT) 2-3 Neighboring gene proteasome activator subunit 2 pseudogene 6

    Genomic regions, transcripts, and products

    Bibliography

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    endogenous Bornavirus-like nucleoprotein 1
    Names
    endogenous Borna-like N element-1
    endogenous Borna-like N element-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001199938.2NP_001186867.1  endogenous Bornavirus-like nucleoprotein 1

      See identical proteins and their annotated locations for NP_001186867.1

      Status: VALIDATED

      Source sequence(s)
      AL157831
      Consensus CDS
      CCDS60498.1
      UniProtKB/Swiss-Prot
      P0CF75, S4R316
      Conserved Domains (1) summary
      pfam06407
      Location:18366
      BDV_P40; Borna disease virus P40 protein
    2. NM_001394757.1NP_001381686.1  endogenous Bornavirus-like nucleoprotein 1

      Status: VALIDATED

      Source sequence(s)
      AL157831
      Consensus CDS
      CCDS60498.1
      UniProtKB/Swiss-Prot
      P0CF75, S4R316
      Related
      ENSP00000473842.1, ENST00000422359.3
      Conserved Domains (1) summary
      pfam06407
      Location:18366
      BDV_P40; Borna disease virus P40 protein

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      22208475..22218015 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      22227526..22237074 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)