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Status
Public on May 20, 2010
Title
Agilent-019315 Sarcophaga crassipalpis custom cDNA array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Sarcophaga crassipalpis Manufacturer
Agilent
Manufacture protocol
60-mer oligo probes designed from S. crassipalpis EST contigs and singletons using Agilent eArray v2.0 and synthesized in situ by an ink-jet printing (Agilent) method on glass slides.
Description
Probesets: UF_Scr_NF_100001 to UF_Scr_NF_100103: four forward probes for each NCBI record of Sarcophaga crassipalpis genes
Submission date
Feb 25, 2010
Last update date
Mar 22, 2012
Contact name
Greg Ragland
E-mail(s)
[email protected] Organization name
University of Florida
Department
Entomology and Nematology
Street address
PO Box 110620
City
Gainesville
State/province
FL
ZIP/Postal code
32611
Country
USA
Samples (40)
GSM515610 , GSM515611 , GSM515612 , GSM515613 , GSM515614 , GSM515615
GSM515616 ,
GSM515617 ,
GSM515618 ,
GSM515619 ,
GSM515620 ,
GSM515621 ,
GSM515622 ,
GSM515623 ,
GSM515624 ,
GSM515625 ,
GSM515626 ,
GSM515627 ,
GSM515628 ,
GSM515629 ,
GSM515630 ,
GSM515631 ,
GSM515632 ,
GSM515633 ,
GSM894573 ,
GSM894574 ,
GSM894575 ,
GSM894576 ,
GSM894577 ,
GSM894578 ,
GSM894579 ,
GSM894580 ,
GSM894581 ,
GSM894582 ,
GSM894583 ,
GSM894584 ,
GSM894585 ,
GSM894586 ,
GSM894587 ,
GSM894588 Series (2)
GSE20526 Transcriptional profiling of Sarcophaga crassipalpis pupal diapause
GSE36483 Transcriptomics of rapid cold-hardening and cold shock recovery in Sarcophaga bullata
Data table header descriptions ID COL Column
ROW Row
ProbeName Probe name
ACCESSION_STRING NCBI ID or ID from Sarcophaga EST Library
CONTROL Control (yes, no)
CONTROL_TYPE Control type
GB_ACC NCBI GenBank accession number
NCBI_SRA_Accession NCBI SRA accession number
ReverseComplement Is the probe a reverse complement, used to generate distribution of hyb intensities
SEQUENCE Probe sequence
SPOT_ID
Data table ID COL ROW ProbeName ACCESSION_STRING CONTROL CONTROL_TYPE GB_ACC NCBI_SRA_Accession ReverseComplement SEQUENCE SPOT_ID 1
266
170
GE_BrightCorner
yes
pos
control
2
266
168
DarkCorner
yes
pos
control
3
266
166
DarkCorner
yes
pos
control
4
266
164
DarkCorner
yes
pos
control
5
266
162
DarkCorner
yes
pos
control
6
266
160
DarkCorner
yes
pos
control
7
266
158
DarkCorner
yes
pos
control
8
266
156
DarkCorner
yes
pos
control
9
266
154
DarkCorner
yes
pos
control
10
266
152
DarkCorner
yes
pos
control
11
266
150
DarkCorner
yes
pos
control
12
266
148
UF_Scr_AF_112289
SRR006884.259452
no
SRR006884.259452
CCGTGGTATGGAATTGTTTTGTTTCTCAAATGTTGAATGATAAAAATGCTGTAAGCCAAG
NCBI_SRA_Accession:SRR006884.259452
13
266
146
UF_Scr_AM_124942
EZ608203.1
no
EZ608203.1 No
TTAAAACACCAGCACCTTTTAGCAATTATATTGCAAGTACCAAGGCGAATTCCCCCGCGT
14
266
144
UF_Scr_AM_125179
EZ604847.1
no
EZ604847.1 No
CTGGGCTAATTTATTACGTACCGAGCTGCGTTTAGAAGAATCTTTGCGTTTGCGTTAAAA
15
266
142
UF_Scr_AM_126692
SRR006884.91613
no
SRR006884.91613
TAAGCTGACAATCTCATTTAGATAATTGAAATTGTATGATGGCTTTTTACAAATCCTTAT
NCBI_SRA_Accession:SRR006884.91613
16
266
140
UF_Scr_UN_137238
SRR006884.35459
no
SRR006884.35459
CGTTGACCGACAAGCCAATTTTAACAACAAATGAGAAAAAGCATCCATCTTATTCAGATA
NCBI_SRA_Accession:SRR006884.35459
17
266
138
UF_Scr_AF_114945
EZ598875.1
no
EZ598875.1 No
TTTTGGCAACAGGAGGTAAACGATATCGAGAAGTACTTTAAAACCCAAGTGGGTTCTCAT
18
266
136
UF_Scr_AM_125802
EZ602318.1
no
EZ602318.1 No
CACCCTGCAATGCTTGGGCCAATTTTCTTTCCAACATTTGAATTTGTCTCTTTTTGCTCT
19
266
134
UF_Scr_AF_109296
EOHUN8204B9S21___1rc_nr1nt0
no
GCCGAAGTTGTACCTCACTTTAGTCATCTTAGTCGCATTAAAATAGCATCATAATCAATT
ProbeName:UF_Scr_AF_109296
20
266
132
UF_Scr_UN_143314
SRR006884.131501
no
SRR006884.131501
GGCTACCGGTGCCGGTAATTTAAAAACTTACCCTTTCTAGATTCGGTTACCAACTGTTAG
NCBI_SRA_Accession:SRR006884.131501
45220 5948 Kbytes .Supplementary data files not provided
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