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Status
Public on Jul 20, 2011
Title
3D-Gene Human Oligo chip 25k V2.1
Technology type
spotted oligonucleotide
Distribution
commercial
Organism
Homo sapiens Manufacturer
TORAY Industries, Inc.
Manufacture protocol
See manufacture's site
Catalog number
See manufacture's site
Description
Ultra-sensitive DNA chip for human genome wide gene expression analysis
Web link
http://www.3d-gene.com Contributor(s)
Kondo S Submission date
Jul 14, 2011
Last update date
Jul 20, 2011
Contact name
Satoshi Kondo
Organization name
Toray Industries,Inc.
Department
New Projects Development Division
Street address
Tebiro 6-10-1
City
Kamakura
State/province
Kanagawa
ZIP/Postal code
248-8555
Country
Japan
Samples (319)
GSM763969 , GSM763970 , GSM991004 , GSM991005 , GSM991006 , GSM991007
GSM1055135 ,
GSM1055136 ,
GSM1055137 ,
GSM1055138 ,
GSM1055139 ,
GSM1055140 ,
GSM1055141 ,
GSM1055142 ,
GSM1055656 ,
GSM1055657 ,
GSM1055658 ,
GSM1057376 ,
GSM1176499 ,
GSM1176500 ,
GSM1176501 ,
GSM1176502 ,
GSM1176503 ,
GSM1176504 ,
GSM1176505 ,
GSM1176506 ,
GSM1176507 ,
GSM1176508 ,
GSM1176509 ,
GSM1176510 ,
GSM1182446 ,
GSM1208305 ,
GSM1208306 ,
GSM1208307 ,
GSM1224718 ,
GSM1275339 ,
GSM1275340 ,
GSM1275341 ,
GSM1275342 ,
GSM1275343 ,
GSM1275344 ,
GSM1275345 ,
GSM1275346 ,
GSM1275347 ,
GSM1275348 ,
GSM1275349 ,
GSM1275350 ,
GSM1275351 ,
GSM1275352 ,
GSM1275353 ,
GSM1275354 ,
GSM1275355 ,
GSM1275356 ,
GSM1275357 ,
GSM1275358 ,
GSM1275359 ,
GSM1275360 ,
GSM1275361 ,
GSM1275362 ,
GSM1275363 ,
GSM1275364 ,
GSM1275365 ,
GSM1275366 ,
GSM1275367 ,
GSM1275368 ,
GSM1275369 ,
GSM1275370 ,
GSM1275371 ,
GSM1275372 ,
GSM1275373 ,
GSM1275374 ,
GSM1275375 ,
GSM1275376 ,
GSM1275377 ,
GSM1275378 ,
GSM1275379 ,
GSM1275380 ,
GSM1275381 ,
GSM1275382 ,
GSM1275383 ,
GSM1275384 ,
GSM1275385 ,
GSM1275386 ,
GSM1275387 ,
GSM1275388 ,
GSM1275389 ,
GSM1308867 ,
GSM1348664 ,
GSM1348665 ,
GSM1348666 ,
GSM1348667 ,
GSM1348970 ,
GSM1348971 ,
GSM1360142 ,
GSM1370494 ,
GSM1370495 ,
GSM1370496 ,
GSM1370497 ,
GSM1370498 ,
GSM1371094 ,
GSM1371095 ,
GSM1371096 ,
GSM1371097 ,
GSM1386569 ,
GSM1386570 ,
GSM1386571 ,
GSM1386572 ,
GSM1386573 ,
GSM1386574 ,
GSM1418693 ,
GSM1418694 ,
GSM1418695 ,
GSM1418696 ,
GSM1418697 ,
GSM1418698 ,
GSM1418699 ,
GSM1418700 ,
GSM1431239 ,
GSM1431240 ,
GSM1431241 ,
GSM1431242 ,
GSM1431243 ,
GSM1431244 ,
GSM1439541 ,
GSM1439542 ,
GSM1439543 ,
GSM1439544 ,
GSM1439545 ,
GSM1439546 ,
GSM1439547 ,
GSM1439548 ,
GSM1439549 ,
GSM1567499 ,
GSM1567500 ,
GSM1584933 ,
GSM1584934 ,
GSM1599831 ,
GSM1599832 ,
GSM1599833 ,
GSM1599834 ,
GSM1599835 ,
GSM1599836 ,
GSM1599837 ,
GSM1599838 ,
GSM1599839 ,
GSM1599840 ,
GSM1599841 ,
GSM1624704 ,
GSM1642528 ,
GSM1642529 ,
GSM1642530 ,
GSM1936199 ,
GSM1936200 ,
GSM1936201 ,
GSM1970341 ,
GSM1970342 ,
GSM1970343 ,
GSM1970344 ,
GSM1977425 ,
GSM1977426 ,
GSM1977427 ,
GSM1977428 ,
GSM2053574 ,
GSM2053575 ,
GSM2053576 ,
GSM2085858 ,
GSM2085859 ,
GSM2085860 ,
GSM2085861 ,
GSM2085862 ,
GSM2085863 ,
GSM2085864 ,
GSM2085865 ,
GSM2085866 ,
GSM2131786 ,
GSM2131787 ,
GSM2131788 ,
GSM2131789 ,
GSM2214671 ,
GSM2214672 ,
GSM2214673 ,
GSM2214674 ,
GSM2214675 ,
GSM2214676 ,
GSM2214677 ,
GSM2214678 ,
GSM2214679 ,
GSM2229621 ,
GSM2229622 ,
GSM2229623 ,
GSM2248377 ,
GSM2248378 ,
GSM2248379 ,
GSM2287200 ,
GSM2287201 ,
GSM2287202 ,
GSM2345081 ,
GSM2345082 ,
GSM2345083 ,
GSM2345084 ,
GSM2345085 ,
GSM2345086 ,
GSM2345087 ,
GSM2345088 ,
GSM2345089 ,
GSM2345090 ,
GSM2464883 ,
GSM2544125 ,
GSM2544126 ,
GSM2544127 ,
GSM2544128 ,
GSM2544129 ,
GSM2544130 ,
GSM2546615 ,
GSM2546616 ,
GSM2546617 ,
GSM2546618 ,
GSM2627584 ,
GSM2627585 ,
GSM2676163 ,
GSM2676164 ,
GSM2695053 ,
GSM2695054 ,
GSM2716906 ,
GSM2716907 ,
GSM2722439 ,
GSM2722440 ,
GSM2722441 ,
GSM2722442 ,
GSM2722443 ,
GSM2722444 ,
GSM2722445 ,
GSM2722446 ,
GSM2722447 ,
GSM2792046 ,
GSM2792047 ,
GSM2849300 ,
GSM2849301 ,
GSM2849302 ,
GSM2866363 ,
GSM2866364 ,
GSM2866365 ,
GSM2868224 ,
GSM2868225 ,
GSM3004221 ,
GSM3004222 ,
GSM3004223 ,
GSM3004224 ,
GSM3038991 ,
GSM3038992 ,
GSM3069640 ,
GSM3069641 ,
GSM3069642 ,
GSM3069643 ,
GSM3069644 ,
GSM3069645 ,
GSM3069646 ,
GSM3069647 ,
GSM3069648 ,
GSM3069649 ,
GSM3069650 ,
GSM3069651 ,
GSM3069652 ,
GSM3069653 ,
GSM3069654 ,
GSM3069655 ,
GSM3069656 ,
GSM3069657 ,
GSM3069658 ,
GSM3069659 ,
GSM3069660 ,
GSM3069661 ,
GSM3069662 ,
GSM3069663 ,
GSM3069664 ,
GSM3069665 ,
GSM3069666 ,
GSM3069667 ,
GSM3139425 ,
GSM3139426 ,
GSM3139427 ,
GSM3139428 ,
GSM3139429 ,
GSM3139430 ,
GSM3139431 ,
GSM3139432 ,
GSM3317742 ,
GSM3317743 ,
GSM3317744 ,
GSM3484581 ,
GSM3583748 ,
GSM3613848 ,
GSM3615471 ,
GSM3637576 ,
GSM3637577 ,
GSM3637578 ,
GSM3637579 ,
GSM3970376 ,
GSM3970377 ,
GSM3970378 ,
GSM3970379 ,
GSM4251951 ,
GSM4251952 ,
GSM4278554 ,
GSM4278555 ,
GSM4278556 ,
GSM4278557 ,
GSM4278558 ,
GSM4278559 ,
GSM4676854 ,
GSM4946514 ,
GSM4946515 ,
GSM5560647 ,
GSM5718984 ,
GSM5718985 ,
GSM5718986 ,
GSM5718987 ,
GSM5718988 ,
GSM5718989 Series (78)
GSE30790 Effects of fzr1 knockdown on senescence-associated gene expression in human diploid fibroblasts.
GSE40297 Gene expression profiling of processing glycosidase inhibitors: defining a common gene set produced by processing glycosidase inhibition in human cervical carcinoma HeLa cells
GSE43012 Gene expression profile upon IL-22 stimulation, forced expression of Hes1, or IL-22 stimulation under forced expression of Hes1, in human colon carcinoma-derived LS174T cells
GSE43015 RHBDD2 silencing and gene expression profiling of breast cancer cells
GSE43148 Mesenchymal Stem Cells (MSCs): Control vs. PTH-stimulated
GSE48367 Knockdown of human TCF4 affects multiple signaling pathways involved in cell survival, epithelial-to-mesenchymal transition and neuronal differentiation
GSE48618 Human HepG2 cells: control DMSO vs. K7174-treated
GSE49861 Effects of DP1 knockdown on E2F target gene expression in normal human diploid fibroblasts.
GSE49862 Gene expression profile of oncogenic Ras-induced senescence in normal human diploid fibroblasts.
GSE49863 Gene expression profile of p16-induced senescence in normal human diploid fibroblasts.
GSE50615 Human Esophageal Squamous Cell Cancer Cell line: Control vs. mir203 expression vector Transfected
GSE52752 Early and late changes in gene and miRNA expression after hepatitis B or C infection in human hepatocyte chimeric mice [tissue_mRNA]
GSE52755 Early and late changes in gene and miRNA expression after hepatitis B or C infection in human hepatocyte chimeric mice
GSE54146 human hTERT-RPE1 cell spheroid : Control siRNA transfected vs. YAP1 siRNA transfected
GSE55928 Changes of mRNA expression levels in HBV-infected human primary hepatocytes and those cells treated with bionanocapsules containing microRNA-93.
GSE55947 SUV420H2 over-expression affects on gene expression in human breast cancer MDA-MB-231 cells
GSE56383 Vascular smooth muscle cell: control vs. exposed to nicotine
GSE56874 Gene expression profile of human cardiac fibroblasts (HCFs), induced cardiomyocytes (iCMs), and heart
GSE56912 SUV420H2 over-expression affects on gene expression in human breast cancer MDA-MB-231 cells [MAA13355]
GSE56913 Gene expression profiles of induced cardiomyocytes(iCMs)
GSE57676 Identification of genes differentially expressed in lung cancer cells after the transfection of miR-221 or miR-222.
GSE58723 Gene expression profiles of epithelial cells infected with microRNA-negative and -positive Epstein-Barr viruses
GSE59243 Effects of SUV39H1 depletion on gene expression in HeLa cells
GSE59568 Gene expression analysis compared myxoid liposarcoma tissue with normal fat tissue
GSE64266 Gene expression profiles of PD fibroblasts treated by SNCA expression-control RNAi.
GSE64953 mRNA expression profile of MCF7 cells with retroviral inducible expression of ΔNp63α [total RNA]
GSE64955 mRNA and miRNA expression profile of MCF7 cells with retroviral inducible expression of ΔNp63α
GSE65532 Gene expression analysis of synovial sarcoma, clinical samples
GSE66541 Expression data from β-globin let7 HeLa tet off cells treated with doxycycline
GSE67208 Differentially expressed genes in xenografts and organoids derived from human cholangiocarcinoma [mRNA]
GSE67210 Differentially expressed genes in xenografts and organoids derived from human cholangiocarcinoma
GSE74837 Gene expression profile of human bone marrow MSCs in an early osteoinductive stage (e-MSCs)
GSE75927 Influence of RNA modification on microRNAs
GSE76236 The metabolism of colorectal cancer adapting to nutritional stress
GSE77518 Gene expression profiles in human ESCs and ESC-derived purified cardiomyocytes
GSE79103 HCV dynamics and cellular gene expression in uPA-SCID chimeric mice with humanized livers during intravenous silibinin monotherapy
GSE80617 mRNA Expression profiles of parental Panc cell lines and Gemcitabine resistance Panc1cell lines
GSE83740 Influence of RNA modification on microRNAs (ver 2)
GSE84223 Gene expression profiles in CD44- and CD44+ hepatocellular carcinoma HuH7 cells
GSE84226 Expression profiles in CD44- and CD44+ hepatocellular carcinoma HuH7 cells Sep 01, 2016 pending None
GSE84725 DKK3 overexpression increases malignant property in head and neck squamous cell carcinoma-derived HSC-3 cells.
GSE85909 Comprehensive gene expression changes by the expression levels of Dicer protein
GSE88753 Two distinct extracellular RNA signatures released by a single cell type identified by microarray and next-generation sequencing [total RNA]
GSE88755 Two distinct extracellular RNA signatures released by a single cell type identified by microarray and next-generation sequencing
GSE93908 Human intrahepatic cholangiocarcinoma (IHCC) cells cultured with expansion medium (EM) or differentiation medium (DM)
GSE96785 mRNA profiling of trifluridine resistant colorectal cancer cell lines and parental cell lines
GSE96787 mRNA and microRNA profiling of trifluridine resistant colorectal cancer cell lines and parental cell lines
GSE96956 Effects of FGFRL1 deficiency on oesophageal squamous cell carcinoma cells
GSE98920 Dual effect of the Nrf2 inhibitor for inhibition of HCV and cell proliferation
GSE100241 Mesothelioma cells: Control vs CD26 knockdown
GSE100848 Microarray analysis of the molecular mechanism of anti-CD26Ab to inhibit mesothelioma cell progression
GSE101829 Human bronchial epithelial cell lines: 16HBE14o- vs. beta/gammaENaC-16HBE14o-, Primary cells NHBE vs. DHBE-CF
GSE102052 Gene expression profiles in HeLa cells exposed to putrescine
GSE102053 Gene expression profiles in HeLa cells exposed to spermine
GSE104199 mRNA expression of HeLa cancer stem cells and non-cancer stem cells
GSE104201 mRNA and miRNA expression of HeLa cancer stem cells and non-cancer stem cells
GSE106717 Gene expression profiles in villin- and PTK7-knockdown HepG2 human hepatocarcinoma cells
GSE107403 Knockdown of DKK3 decreases malignant property in head and neck squamous cell carcinoma-derived HSC-3 cells.
GSE107483 Comprehensive transcriptome analysis regarding aging using normal human derived fibroblasts (NHDF)
GSE110615 Genes activated in an SREBP1 dependent manner in ovarian cancer cells exposed to serum starvation and hypoxia
GSE111746 The effect of S1P on the gene expression in the bronchial epithelial cells
GSE112407 Gene expression profiles in organoids derived from biliary tract carcinomas [MAA-17164_3]
GSE112408 microRNA and geneexpression profiles in organoids derived from biliary tract carcinomas
GSE114316 MicroRNA-8073: Tumor suppressor and potential therapeutic treatment [mRNA]
GSE114318 MicroRNA-8073: Tumor suppressor and potential therapeutic treatment
GSE118048 Gene expression profile upon TNF-a stimulation, forced expression of NICD, or TNF-a stimulation under forced expression of NICD, in human colon carcinoma-derived LS174T cells
GSE122750 Human induced pluripotent stem cell-derived hepatic stellate-like cells (iPS-HSCs) overexpressing LHX2 vs control iPS-HSCs
GSE125871 PKHD1-deficient human induced pluripotent stem (iPS) cell-derived cholangiocyte-like cells (PKHD1-KO CCs) vs heterozygously mutated PKHD1 human iPS cell-derived cholangiocyte-like cells (PKHD1-Hetero CCs)
GSE126812 Human ESC-embryoid body sorted populations: TMRM-hi and ALCAM-low vs. TMRM-hi and ALCAM-hi
GSE126856 Human prostate cancer cell line, 22Rv1: Control vs. luteolin treatment
GSE127714 mRNA expression profile in THP-1 macrophages treated with human serum extracellular vesicles
GSE134794 Target suppression effect by methylated miRNA
GSE143194 Comprehensive transcriptome analysis regarding CDR1AS expression
GSE144044 Gene expression profiles in maspin-overexpressing MDA-MB-231 breast cancer cells
GSE154672 The gene analysis in telaprevir-treated keratinocytes.
GSE162201 Gene expression profiles in replicative senescence in TIG-3 cells
GSE183553 HumanCervical Cancer Cell Line: Control vs. HOXD9 knock out
GSE190272 An organoids-on-a-chip model of human ARPKD
Data table header descriptions ID Ensembl_Gene_ID Ensembl Gene ID
ORF Gene Symbol
CLONE_ID GB_ACC GenBank
GB_ACC RefSeq ID
description description
SPOT_ID
Data table ID Ensembl_Gene_ID ORF CLONE_ID GB_ACC GB_ACC description SPOT_ID H200006131
ENSG00000163828
TDGF1 NM_003212 Teratocarcinoma-derived growth factor 1 Precursor (Epidermal growth factor-like cripto protein CR1)(Cripto-1 growth factor)(CRGF)
H200009362
ENSG00000155304
STCH NM_006948 Heat shock 70 kDa protein 13 Precursor (Stress 70 protein chaperone microsome-associated 60 kDa protein)(Microsomal stress 70 protein ATPase core)
H200012193
ENSG00000100380
ST13 NM_003932 Hsc70-interacting protein (Hip)(Suppression of tumorigenicity protein 13)(Putative tumor suppressor ST13)(Protein FAM10A1)(Progesterone receptor-associated p48 protein)(Renal carcinoma antigen NY-REN-33)
H200006492
ENSG00000127616
SMARCA4 NM_003072 Probable global transcription activator SNF2L4 (EC 3.6.1.-)(ATP-dependent helicase SMARCA4)(SNF2-beta)(BRG-1 protein)(Mitotic growth and transcription activator)(Brahma protein homolog 1)(SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4)
H300013003
ENSG00000100075
SLC25A1 NM_005984 Tricarboxylate transport protein, mitochondrial Precursor (Citrate transport protein)(CTP)(Tricarboxylate carrier protein)(Solute carrier family 25 member 1)
H200006102
ENSG00000178035
IMPDH2 NM_000884 Inosine-5'-monophosphate dehydrogenase 2 (IMP dehydrogenase 2)(EC 1.1.1.205)(IMPDH-II)(IMPD 2)
AHsV10000483
IL15 NM_000585.3 Interleukin-15 Precursor (IL-15)
AHsV10001584
HSPE1 NM_002157.2 10 kDa heat shock protein, mitochondrial (Hsp10)(10 kDa chaperonin)(CPN10)(Early-pregnancy factor)(EPF)
H200017080
ENSG00000204388
HSPA1B NM_005346 Heat shock 70 kDa protein 1 (HSP70.1)(HSP70-1/HSP70-2)
AHsV10001782
HIF1A NM_181054.2 Hypoxia-inducible factor 1 alpha (HIF-1 alpha)(HIF1 alpha)(ARNT-interacting protein)(Member of PAS protein 1)(Basic-helix-loop-helix-PAS protein MOP1)
H200010349
ENSG00000101336
HCK NM_002110 Tyrosine-protein kinase HCK (EC 2.7.10.2)(Hemopoietic cell kinase)(p59-HCK/p60-HCK)
CHsGV10001868
GRID1 NM_017551.2 Glutamate receptor delta-1 subunit Precursor (GluR delta-1)
H200016643
ENSG00000169727
GPS1 NM_004127 COP9 signalosome complex subunit 1 (Signalosome subunit 1)(SGN1)(JAB1-containing signalosome subunit 1)(G protein pathway suppressor 1)(Protein GPS1)(Protein MFH)
AHsV10000904
MLF1 NM_022443.3 Myeloid leukemia factor 1 (Myelodysplasia-myeloid leukemia factor 1)
AHsV10002530
MXD1 NM_002357.2 MAD protein (MAX dimerizer)(MAX dimerization protein 1)
AHsV10002962
LTF NM_002343.2 Lactotransferrin Precursor (Lactoferrin)(EC 3.4.21.-)(Talalactoferrin)
CHsGV10001630
NM_005553 H200012441
ENSG00000167748
KLK1 NM_002257 Kallikrein-1 Precursor (EC 3.4.21.35)(Tissue kallikrein)(Kidney/pancreas/salivary gland kallikrein)
H300019439
ENSG00000058404
CAMK2B NM_172080 Calcium/calmodulin-dependent protein kinase type II beta chain (CaM-kinase II beta chain)(CaM kinase II subunit beta)(CaMK-II subunit beta)(EC 2.7.11.17)
CHsGV10002911
CALB1 NM_004929.2 Calbindin (Vitamin D-dependent calcium-binding protein, avian-type)(Calbindin D28)(D-28K)
24460 2763 Kbytes .Supplementary data files not provided
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