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Platform GPL14897 Query DataSets for GPL14897
Status Public on Aug 01, 2012
Title Swine Protein-Annotated Oligonucleotide Microarray [oligo_ID version]
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Sus scrofa
Manufacturer Illumina (Oligo synthesis); University of Arizona (Array printing)
Manufacture protocol Printing protocols available at:
http://ag.arizona.edu/microarray/protocol1A.doc
Information on oligonucleotide design available at:
http://www.pigoligoarray.org/
 
 
Submission date Nov 16, 2011
Last update date Jan 18, 2013
Contact name James Michael Wilkinson
E-mail(s) [email protected]
Organization name University of Alberta
Department Agriculture, Food, and Nutritional Science
Street address Ag/For Building
City Edmonton
State/province Alberta
ZIP/Postal code T6G 2P5
Country Canada
 
Samples (24) GSM835149, GSM835150, GSM835151, GSM835152, GSM835153, GSM835154 
Series (1)
GSE33760 Transcriptomic analyis of the response of porcine PBMC to stimulation with concanavalin A

Data table header descriptions
ID Unique Oligonucleotide ID
SEQUENCE Oligonucleotide sequence
HGNC HUGO Gene Nomenclature Committee Abbreviation
Best_Match_Description Best sequence identity match description
GB_ACC GenBank Accession number
SPOT_ID spot identifier

Data table
ID SEQUENCE HGNC Best_Match_Description GB_ACC SPOT_ID
10010:13638_CL2Contig1:r ACCAGGAGGAGATTTCCAGCTATTACGGTGTCTCCGGGTTCCAGACCACTGAACACTTTCTGACTGCAGT GNL3L guanine nucleotide binding protein-like 3 (nucleolar)-like [Source:RefSeq_peptide;Acc:NP_061940]
10027:37260_34161065:f AAGCGCTGTCTTTTAGCTCCAAGGTGGGATTATCCAGAAGGAACTCCTAACGGAGGTAGTACCCCTCTCC No Description
10146:20095_CL3Contig1:f ATCATCGAGCTCTTCGTCAAGGCTGGCAGTGATGGTGAGAGCATAGGAAACTGCCCCTTTTCTCAGAGGC CLIC4 Chloride intracellular channel protein 4 (Intracellular chloride ion channel protein p64H1). [Source:Uniprot/SWISSPROT;Acc:Q9Y696]
10172:241_CL1Contig1:r CCCAAGGAGTGACCCCAAATTTACATATACTGGAACTGAAATGCGCACAGTTGCTGAAAAGGTCGACGCC BRCC3 BRCA1/BRCA2-containing complex subunit 3. [Source:Uniprot/SWISSPROT;Acc:P46736]
10266:2261_CL2Contig1:f CCAACGTGTCAAGGGCCAAGGCCGTGCGGGCCCTGAGAGACAACCAGAGCGACATTGTCAACGCCATCAT NACAD No Description
10283:3740_CL2Contig1:f AACGGTCTTGGATGAGCAGGTGGAAGTCGTCGGTTCTGCATGAAGGAGAAGGGAACATCAGGAGCGTGAA VPS41 Vacuolar assembly protein VPS41 homolog (S53). [Source:Uniprot/SWISSPROT;Acc:P49754]
10406:7781_CL1Contig2:r TCAAGATCCAGAGGGACTTCATGCTAAGCTTCTCCAGAGACCCCAAAGGCTACATCCAAGACCTCCTCCG SMARCD3 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 (60 kDa BRG-1/Brm-associated factor subunit C) (BRG1-associated factor 60C). [Source:Uniprot/SWISSPROT;Acc:Q6STE5]
10418:3293_CL5Contig1:f ATCTACAACCAGAACGACCCCTGGGACCCACCCGTGGTCTTTGAGGAGTTTCTTCGAAACAATGAAAACA AOC3 Membrane copper amine oxidase (EC 1.4.3.6) (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular adhesion protein 1) (VAP-1) (HPAO). [Source:Uniprot/SWISSPROT;Acc:Q16853]
10557:38776_37793177:f GGACCTTTGCTTTACTGGCTCCCCATGTGTGTTCTTGCAAGTATTATTGTCGTGGGACTTAAGGGAATGC SLC26A7 solute carrier family 26, member 7 isoform b [Source:RefSeq_peptide;Acc:NP_599028]
10573:2963_CL1Contig1:r AGAGCTATGTGTGGAACAACATGGTGAGCAAGAGGATAGAAGAGTACGGACTGAAGCCTGTCCCTGGGGA PUS7 Probable pseudouridine synthase KIAA1897 (EC 5.4.99.-). [Source:Uniprot/SWISSPROT;Acc:Q96PZ0]
1069:1374_32949159:f ATCAAGAAACTATACAGAGTTCCCGACTTCCCCTCGAAACGCCTGCCCAACTGGAGGACCAGAGGATTGG SNX22 Sorting nexin-22. [Source:Uniprot/SWISSPROT;Acc:Q96L94]
10708:793_CL1Contig2:f AGCTGGTGTATCCTCTTCTGGCCTTTACCCGACAAGCACTGAACCTGCCAGATGTGTTTGGGTTGGTGGT FBXO7 F-box only protein 7. [Source:Uniprot/SWISSPROT;Acc:Q9Y3I1]
10805:13066_CL1Contig1:f CCTTTGCCGTGTTCCCCAGCGACGGTGGCTCCCTACAGAAGAAATTAAAAGTCTGGTTCCGGATTCCAAA HEBP1 Heme-binding protein 1 (p22HBP). [Source:Uniprot/SWISSPROT;Acc:Q9NRV9]
10823:45360_C0007760d20-7:f TGTGGGGAGAGCTGAACACTGGATTGGGCTGAAAAATGAAGATGGCCAGACTTGGAAATGGTCAAATGGC CD69 Early activation antigen CD69 (Early T-cell activation antigen p60) (GP32/28) (Leu-23) (MLR-3) (EA1) (BL-AC/P26) (Activation inducer molecule) (AIM). [Source:Uniprot/SWISSPROT;Acc:Q07108]
10948:5316_54534002:f AGGGATGGATGTCGATCTTGGACGAGCCTGGAGAGTGGAAGAAGCACTGGTTTGTGCTGACTGATTCAAG TRIOBP TRIO and F-actin binding protein isoform 2 [Source:RefSeq_peptide;Acc:NP_619538]
10969:11324_CL2Contig1:r AGGTGCCTACTACAACCTTGACTCCAAACTGAAGATGCCTGAATGGATTGGAGGCGAAAGCGAGCTCAGG JOSD1 Josephin-1 (Josephin domain containing 1). [Source:Uniprot/SWISSPROT;Acc:Q15040]
11073:11669_CL4Contig1:f TCGGGATGGGAAACGCAGATTACATGGCCGCCTTCCTGCAGGTGCTGCTGCCCTTGGCCTTTGAGTTCAA HDAC10 Histone deacetylase 10 (HD10). [Source:Uniprot/SWISSPROT;Acc:Q969S8]
1109:18597_CL1Contig1:r CCGGATGATGATCCCAGATTGCCAGCGCAGGTTGGAAGCTGCATATACCGATCTTCTGCAGTTACTAGAG TBCA Tubulin-specific chaperone A (Tubulin-folding cofactor A) (CFA) (TCP1- chaperonin cofactor A). [Source:Uniprot/SWISSPROT;Acc:O75347]
11195:8566_CL1Contig1:f TGACTGCAAGTATGGAAGCCAAGGCCTCCTCCCAGCTGGAGAAAGAAGACAAGCCAGCTGAAACCAAGAA LIMA1 Epithelial protein lost in neoplasm. [Source:Uniprot/SWISSPROT;Acc:Q9UHB6]
11207:12593_CL2Contig1:f GGTCTGCCCCAACCCTGTGGCCACGCTGCTTGAATGGCAGGATGCCCTGAGTTTTATTCCAGTCAGTTCT TROAP Trophinin-associated protein (Tastin) (Trophinin-assisting protein). [Source:Uniprot/SWISSPROT;Acc:Q12815]

Total number of rows: 20736

Table truncated, full table size 3939 Kbytes.




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