GEO help: Mouse over screen elements for information.
Status
Public on May 06, 2005
Title
Bead-based microRNA profiling platform version 1
Technology type
oligonucleotide beads
Distribution
non-commercial
Organism
Homo sapiens
Description
Capture oligonucleotides were crosslinked to uniquely-colored Luminex xMap beads, which serve as discriminators of probe identity
Web link
http://www.broad.mit.edu/cancer/pub/miGCM Contributor(s)
Lu J , Getz G , Miska EA , Alvarez-Saavedra EA , Lamb J , Peck D , Ebert BL , Mak RH , Sweet-Cordero A , Ferrando AA , Downing JR , Jacks T , Horvitz HR , Golub TR Submission date
Apr 25, 2005
Last update date
Jun 16, 2005
Contact name
Jun Lu
E-mail(s)
[email protected] Phone
203-737-3426
Organization name
Yale University
Department
Yale Stem Cell Center and Department of Genetics
Lab
Jun Lu
Street address
10 Amistad St
City
New Haven
State/province
CT
ZIP/Postal code
06520
Country
USA
Samples (255)
GSM48994 , GSM48995 , GSM48996 , GSM48997 , GSM48998 , GSM48999
GSM49000 ,
GSM49001 ,
GSM49002 ,
GSM49003 ,
GSM49004 ,
GSM49005 ,
GSM49006 ,
GSM49007 ,
GSM49008 ,
GSM49009 ,
GSM49010 ,
GSM49011 ,
GSM49012 ,
GSM49013 ,
GSM49014 ,
GSM49015 ,
GSM49016 ,
GSM49017 ,
GSM49018 ,
GSM49019 ,
GSM49020 ,
GSM49021 ,
GSM49022 ,
GSM49023 ,
GSM49024 ,
GSM49025 ,
GSM49026 ,
GSM49027 ,
GSM49028 ,
GSM49029 ,
GSM49030 ,
GSM49031 ,
GSM49032 ,
GSM49033 ,
GSM49034 ,
GSM49035 ,
GSM49036 ,
GSM49037 ,
GSM49038 ,
GSM49039 ,
GSM49040 ,
GSM49041 ,
GSM49042 ,
GSM49043 ,
GSM49044 ,
GSM49045 ,
GSM49046 ,
GSM49047 ,
GSM49048 ,
GSM49049 ,
GSM49050 ,
GSM49051 ,
GSM49052 ,
GSM49053 ,
GSM49054 ,
GSM49055 ,
GSM49056 ,
GSM49057 ,
GSM49058 ,
GSM49059 ,
GSM49060 ,
GSM49061 ,
GSM49062 ,
GSM49063 ,
GSM49064 ,
GSM49065 ,
GSM49066 ,
GSM49067 ,
GSM49068 ,
GSM49069 ,
GSM49070 ,
GSM49071 ,
GSM49072 ,
GSM49073 ,
GSM49074 ,
GSM49075 ,
GSM49076 ,
GSM49077 ,
GSM49078 ,
GSM49079 ,
GSM49080 ,
GSM49081 ,
GSM49082 ,
GSM49083 ,
GSM49084 ,
GSM49085 ,
GSM49086 ,
GSM49087 ,
GSM49088 ,
GSM49089 ,
GSM49090 ,
GSM49091 ,
GSM49092 ,
GSM49093 ,
GSM49094 ,
GSM49095 ,
GSM49096 ,
GSM49097 ,
GSM49098 ,
GSM49099 ,
GSM49100 ,
GSM49101 ,
GSM49102 ,
GSM49103 ,
GSM49104 ,
GSM49105 ,
GSM49106 ,
GSM49107 ,
GSM49108 ,
GSM49109 ,
GSM49110 ,
GSM49111 ,
GSM49112 ,
GSM49113 ,
GSM49114 ,
GSM49115 ,
GSM49116 ,
GSM49117 ,
GSM49118 ,
GSM49119 ,
GSM49120 ,
GSM49121 ,
GSM49122 ,
GSM49123 ,
GSM49124 ,
GSM49125 ,
GSM49126 ,
GSM49127 ,
GSM49128 ,
GSM49129 ,
GSM49130 ,
GSM49131 ,
GSM49132 ,
GSM49133 ,
GSM49134 ,
GSM49135 ,
GSM49136 ,
GSM49137 ,
GSM49138 ,
GSM49139 ,
GSM49140 ,
GSM49141 ,
GSM49142 ,
GSM49143 ,
GSM49144 ,
GSM49145 ,
GSM49146 ,
GSM49147 ,
GSM49148 ,
GSM49149 ,
GSM49150 ,
GSM49151 ,
GSM49152 ,
GSM49153 ,
GSM49154 ,
GSM49155 ,
GSM49156 ,
GSM49157 ,
GSM49158 ,
GSM49159 ,
GSM49160 ,
GSM49161 ,
GSM49162 ,
GSM49163 ,
GSM49164 ,
GSM49165 ,
GSM49166 ,
GSM49167 ,
GSM49168 ,
GSM49169 ,
GSM49170 ,
GSM49171 ,
GSM49172 ,
GSM49173 ,
GSM49174 ,
GSM49175 ,
GSM49176 ,
GSM49177 ,
GSM49178 ,
GSM49179 ,
GSM49180 ,
GSM49181 ,
GSM49182 ,
GSM49183 ,
GSM49184 ,
GSM49185 ,
GSM49186 ,
GSM49187 ,
GSM49188 ,
GSM49189 ,
GSM49190 ,
GSM49191 ,
GSM49192 ,
GSM49193 ,
GSM49194 ,
GSM49195 ,
GSM49196 ,
GSM49197 ,
GSM49198 ,
GSM49199 ,
GSM49200 ,
GSM49201 ,
GSM49202 ,
GSM49203 ,
GSM49204 ,
GSM49205 ,
GSM49206 ,
GSM49207 ,
GSM49208 ,
GSM49209 ,
GSM49210 ,
GSM49211 ,
GSM49212 ,
GSM49213 ,
GSM49214 ,
GSM49215 ,
GSM49216 ,
GSM49217 ,
GSM49218 ,
GSM49219 ,
GSM49220 ,
GSM49221 ,
GSM49222 ,
GSM49223 ,
GSM49224 ,
GSM49225 ,
GSM49226 ,
GSM49227 ,
GSM49228 ,
GSM49229 ,
GSM49230 ,
GSM49231 ,
GSM49232 ,
GSM49233 ,
GSM49234 ,
GSM49235 ,
GSM49236 ,
GSM49237 ,
GSM49238 ,
GSM49239 ,
GSM49240 ,
GSM49241 ,
GSM49242 ,
GSM49243 ,
GSM49244 ,
GSM49245 ,
GSM49246 ,
GSM49247 ,
GSM49248 Series (1)
Data table header descriptions ID PROBE_NAME Probe name
PROBE_SEQUENCE SEQUENCE TARGET_SEQ Target sequence
R_HUMAN Recongnized human microRNA in microRNA registry rfam 5.0 database
R_MOUSE Recongnized mouse microRNA in microRNA registry rfam 5.0 database
R_RAT Recongnized rat microRNA in microRNA registry rfam 5.0 database
R_OTHER Recongnizing other sequences
CTRL_TYPE If it is a control feature and what type of control
SET_ASSIGN Bead set assignment for this probe
USAGE Whether used or not in final data analysis
Data table ID PROBE_NAME PROBE_SEQUENCE SEQUENCE TARGET_SEQ R_HUMAN R_MOUSE R_RAT R_OTHER CTRL_TYPE SET_ASSIGN USAGE 1
EAM103
/5AmMC6/TGGCATTCACCGCGTGCCTTA
TGGCATTCACCGCGTGCCTTA
UUAAGGCACGCGGUGAAUGCCA
hsa-miR-124a
mmu-miR-124a
rno-miR-124a
NA
NA
1
Used
2
EAM105
/5AmMC6/TCACAAGTTAGGGTCTCAGGGA
TCACAAGTTAGGGTCTCAGGGA
UCCCUGAGACCCUAACUUGUGA
hsa-miR-125b
mmu-miR-125b
rno-miR-125b
NA
NA
1
Used
3
EAM109
/5AmMC6/AACAACAAAATCACTAGTCTTCCA
AACAACAAAATCACTAGTCTTCCA
UGGAAGACUAGUGAUUUUGUU
hsa-miR-7
mmu-miR-7
rno-miR-7
NA
NA
1
Used
4
EAM111
/5AmMC6/TAACTGTACAAACTACTACCTCA
TAACTGTACAAACTACTACCTCA
UGAGGUAGUAGUUUGUACAGU
hsa-let-7g
mmu-let-7g
NA
NA
NA
1
Used
5
EAM115
/5AmMC6/CGCCAATATTTACGTGCTGCTA
CGCCAATATTTACGTGCTGCTA
UAGCAGCACGUAAAUAUUGGCG
hsa-miR-16
mmu-miR-16
rno-miR-16
NA
NA
1
Used
6
EAM119
/5AmMC6/AACACTGATTTCAAATGGTGCTA
AACACTGATTTCAAATGGTGCTA
UAGCACCAUUUGAAAUCAGUGU
hsa-miR-29b
mmu-miR-29b
rno-miR-29b
NA
NA
1
Used
7
EAM121
/5AmMC6/CACAAGATCGGATCTACGGGT
CACAAGATCGGATCTACGGGT
AACCCGUAGAUCCGAUCUUGUG
hsa-miR-99a
mmu-miR-99a
rno-miR-99a
NA
NA
1
Used
8
EAM131
/5AmMC6/ACAGGCCGGGACAAGTGCAATAT
ACAGGCCGGGACAAGTGCAATAT
UAUUGCACUUGUCCCGGCCUGU
hsa-miR-92
mmu-miR-92
rno-miR-92
NA
NA
1
Used
9
EAM139
/5AmMC6/TAACCCATGGAATTCAGTTCTCA
TAACCCATGGAATTCAGTTCTCA
UGAGAACUGAAUUCCAUGGGUU
hsa-miR-146
mmu-miR-146
rno-miR-146
NA
NA
1
Used
10
EAM145
/5AmMC6/AACCATACAACCTACTACCTCA
AACCATACAACCTACTACCTCA
UGAGGUAGUAGGUUGUAUGGUU
hsa-let-7c
mmu-let-7c
rno-let-7c
NA
NA
1
Used
11
EAM152
/5AmMC6/ACTTTCGGTTATCTAGCTTTAT
ACTTTCGGTTATCTAGCTTTAT
UAAAGCUAGAUAACCGAAAGU
hsa-miR-9*
mmu-miR-9*
NA
NA
NA
1
Used
12
EAM238
/5AmMC6/ATACATACTTCTTTACATTCCA
ATACATACTTCTTTACATTCCA
UGGAAUGUAAAGAAGUAUGUA
hsa-miR-1
mmu-miR-1
NA
NA
NA
1
Used
13
EAM270
/5AmMC6/GCTGAGTGTAGGATGTTTACA
GCTGAGTGTAGGATGTTTACA
UGUAAACAUCCUACACUCAGC
hsa-miR-30b
mmu-miR-30b
rno-miR-30b
NA
NA
1
Used
14
EAM159
/5AmMC6/ATGCCCTTTTAACATTGCACTG
ATGCCCTTTTAACATTGCACTG
CAGUGCAAUGUUAAAAGGGC
hsa-miR-130a
mmu-miR-130a
rno-miR-130a
NA
NA
1
Used
15
EAM163
/5AmMC6/TCCATAAAGTAGGAAACACTACA
TCCATAAAGTAGGAAACACTACA
UGUAGUGUUUCCUACUUUAUGGA
hsa-miR-142-3p
mmu-miR-142-3p
rno-miR-142-3p
NA
NA
1
Used
16
EAM171
/5AmMC6/CTACGCGTATTCTTAAGCAATAA
CTACGCGTATTCTTAAGCAATAA
UAUUGCUUAAGAAUACGCGUAG
hsa-miR-137
mmu-miR-137
rno-miR-137
NA
NA
1
Used
17
EAM183
/5AmMC6/AGCACAAACTACTACCTCA
AGCACAAACTACTACCTCA
UGAGGUAGUAGUUUGUGCU
hsa-let-7i
mmu-let-7i
rno-let-7i
NA
NA
1
Used
18
EAM184
/5AmMC6/CACAAGTTCGGATCTACGGGTT
CACAAGTTCGGATCTACGGGTT
AACCCGUAGAUCCGAACUUGUG
hsa-miR-100
mmu-miR-100
rno-miR-100
NA
NA
1
Used
19
EAM186
/5AmMC6/GCTACCTGCACTGTAAGCACTTTT
GCTACCTGCACTGTAAGCACTTTT
AAAAGUGCUUACAGUGCAGGUAGC
hsa-miR-106a
NA
NA
NA
NA
1
Used
20
EAM189
/5AmMC6/CACAAATTCGGATCTACAGGGTA
CACAAATTCGGATCTACAGGGTA
UACCCUGUAGAUCCGAAUUUGUG
hsa-miR-10a
mmu-miR-10a
rno-miR-10a
NA
NA
1
Used
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