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Platform GPL2085 Query DataSets for GPL2085
Status Public on Jun 29, 2005
Title Human tiling array using Nimblegen platform, set 34 of 38
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
 
Description High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16. There are a total of 38 arrays. This is set 34.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab
 
Web link http://www.nimblegen.com/
Contributor(s) Kim TH, Barrera LO, Zhang M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B
Submission date May 17, 2005
Last update date Oct 27, 2010
Contact name Chunxu Qu
E-mail(s) [email protected]
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Samples (1) GSM51794
Series (1)
GSE2672 A high-resolution map of active promoters in the human genome

Data table header descriptions
ID
Probe ID probe id
Chromosome chromosome
Position position
SEQUENCE probe sequence
Comment comment

Data table
ID Probe ID Chromosome Position SEQUENCE Comment
1 CHR18P020678897 CHR18 20678897 CTCTAACCAGTTCCTTGGTCAGTTATCCATCCCCACACATCATGCCCACT SET34
2 CHR18P020678997 CHR18 20678997 CCTCTCTATGCATCCTTCTTTCCTAACCCAGCTGCCCTCTGCCTGGCCAG SET34
3 CHR18P020679097 CHR18 20679097 TCTGAGTGAATTTCCAACCTGCTTCATGCCGCTGATAGTATAGCAGGAAT SET34
4 CHR18P020679828 CHR18 20679828 ATGCCATTAGGAAGATTGAGATGAGTTCATCCCTCTGTCTCCCTCATCCC SET34
5 CHR18P020679928 CHR18 20679928 CTATACATTCATGCCCATTTAGCTTTCCTCTTCTCACCCAACTTATCCAC SET34
6 CHR18P020680028 CHR18 20680028 TGAGTACTGAGCATTTATTTTTATATACTATCTTATGTACTCTTCATGCA SET34
7 CHR18P020680237 CHR18 20680237 CATGGGTTAATAGCTCCATGGGGTACGGATGTGCGTTAGGAGGAAAAAGG SET34
8 CHR18P020680337 CHR18 20680337 GCTGAGAACACTGCTTACAAGGAGCCTGGACCTTTGGGGGATCCCCTCAG SET34
9 CHR18P020680437 CHR18 20680437 GCTGTACCTGCAAATGCTTCACATCTGGGTAAATCCAACAATCTGCCTTT SET34
10 CHR18P020680537 CHR18 20680537 GCAACCTAAGAGAATTTTAGAAAAAAAATCTCAGGCTCCTATTTGTGGTC SET34
11 CHR18P020680637 CHR18 20680637 CGTGGATCCATCTGGGCTTCTAGCTTCATAATTCTCTCCATTGGCACCTT SET34
12 CHR18P020680737 CHR18 20680737 AACATCAAGCTCCAGCATCCAGCCCTCTTCCCAGCTTCCTTTCTCCTTCC SET34
13 CHR18P020680837 CHR18 20680837 CAAGCCCTTGGTCCTCCCTTCCTCTCATGTCTATTAGGCCCATCTTGGCT SET34
14 CHR18P020681019 CHR18 20681019 CTTACAAGGAGCCTGGACCTTTGGGGGATCCCCTCAGTCTCTCTAGCCCT SET34
15 CHR18P020681119 CHR18 20681119 ATGCTTCACATCTGGGTAAATCCAACAATCTGCCTTTGCCATTGTTTTAA SET34
16 CHR18P020681219 CHR18 20681219 GAGAATTTTAGAAAAAAAAATCATAAGAAAGCTGCAGGGATGCAGCTAGG SET34
17 CHR18P020681319 CHR18 20681319 AATTATCTGTATCATCATTTCCATTTCTCTTTGTGCTTCTGCCCCTGTCT SET34
18 CHR18P020681419 CHR18 20681419 TCCACCAGTAATTTCTGAATTTACAGTTTCAGAGAAGGTAGACTGAGATG SET34
19 CHR18P020681519 CHR18 20681519 CAAGATGGGATCAGTTTCATGCTGCAGGATCAGTCAATTGTGGCACAGTC SET34
20 CHR18P020681619 CHR18 20681619 TGGAAAATTGGAGGATGGGAGGGAGAACTGTACAGCCAAAACAATAGCAG SET34

Total number of rows: 389199

Table truncated, full table size 35966 Kbytes.




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