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Platform GPL21514 Query DataSets for GPL21514
Status Public on Feb 24, 2016
Title [PorGene-1_0-st] Porcine Gene 1.0 ST Array [probe set (exon) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Sus scrofa
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

Feb 24, 2016: annotation table updated with netaffx build 34

Annotations dervived from PorGene-1_0-st-v1.na34.sscr2.probeset.csv:

#%chip_type=PorGene-1_0-st-v1
#%lib_set_name=PorGene-1_0-st
#%lib_set_version=v1
#%genome-version=sscr2
#%genome-version-ucsc=sscr2
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-version-ucsc=sscr2
#%netaffx-annotation-date=2013-08-30
#%netaffx-annotation-netaffx-build=34
#%netaffx-annotation-data-type=probe_set

 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=modelorg_1_1_array
http://www.affymetrix.com/support/technical/libraryfilesmain.affx
Submission date Feb 24, 2016
Last update date Feb 24, 2016
Organization Affymetrix, Inc.
E-mail(s) [email protected], [email protected]
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (30) GSM2070605, GSM2070606, GSM2070607, GSM2070608, GSM2070609, GSM2070610 
Series (2)
GSE78254 Deciphering transcriptome profiles of porcine PBMCs in response to porcine reproductive and respiratory syndrome virus vaccine
GSE84516 PBMC transcriptome profiles identifies potential candidate genes and functional networks controlling the innate and the adaptive immune response to PRRSV vaccine in Pietrain pig

Data table header descriptions
ID probeset_id
seqname
strand
start
stop
SPOT_ID
probe_count
transcript_cluster_id
exon_id
psr_id
gene_assignment
mrna_assignment
probeset_type

Data table
ID seqname strand start stop SPOT_ID probe_count transcript_cluster_id exon_id psr_id gene_assignment mrna_assignment probeset_type
15183075 chr1 + 373111 373201 chr1(+):373111-373201 3 15183074 532361 222331 --- AK346362 // chr1 // 100 // 3 // 3 // 0 main
15183076 chr1 + 376493 376579 chr1(+):376493-376579 3 15183074 532362 222333 --- AK346362 // chr1 // 100 // 3 // 3 // 0 main
15183077 chr1 + 377201 377280 chr1(+):377201-377280 3 15183074 532363 222335 --- AK346362 // chr1 // 100 // 3 // 2 // 0 main
15183078 chr1 + 378302 378416 chr1(+):378302-378416 3 15183074 532364 222337 --- AK346362 // chr1 // 100 // 3 // 3 // 0 main
15183079 chr1 + 378560 378663 chr1(+):378560-378663 3 15183074 532365 222339 --- AK346362 // chr1 // 100 // 3 // 3 // 0 main
15183080 chr1 + 379177 379269 chr1(+):379177-379269 3 15183074 532366 222341 --- AK346362 // chr1 // 100 // 3 // 3 // 0 main
15183081 chr1 + 380803 380898 chr1(+):380803-380898 3 15183074 532367 222343 --- AK346362 // chr1 // 100 // 3 // 3 // 0 main
15183082 chr1 + 383586 383737 chr1(+):383586-383737 3 15183074 532368 222345 --- AK346362 // chr1 // 100 // 3 // 3 // 0 main
15183083 chr1 + 387989 388086 chr1(+):387989-388086 3 15183074 532369 222347 --- AK346362 // chr1 // 100 // 3 // 3 // 0 main
15183084 chr1 + 388367 388486 chr1(+):388367-388486 3 15183074 532370 222349 --- AK346362 // chr1 // 100 // 3 // 3 // 0 main
15183085 chr1 + 389624 389774 chr1(+):389624-389774 3 15183074 532371 222351 --- AK346362 // chr1 // 100 // 3 // 3 // 0 main
15183087 chr1 + 399835 399859 chr1(+):399835-399859 1 15183086 532373 222354 XM_003480212 // LOC100736968 XM_003480212 // chr1 // 100 // 1 // 1 // 0 /// GENSCAN00000010683 // chr1 // 100 // 1 // 1 // 0 main
15183088 chr1 + 406152 406176 chr1(+):406152-406176 1 15183086 532374 222356 XM_003480212 // LOC100736968 XM_003480212 // chr1 // 100 // 1 // 1 // 0 /// GENSCAN00000010683 // chr1 // 100 // 1 // 1 // 0 main
15183089 chr1 + 411177 411201 chr1(+):411177-411201 1 15183086 532375 222358 XM_003480212 // LOC100736968 XM_003480212 // chr1 // 100 // 1 // 1 // 0 /// GENSCAN00000010683 // chr1 // 100 // 1 // 1 // 0 main
15183090 chr1 + 413613 413637 chr1(+):413613-413637 1 15183086 532376 222360 XM_003480212 // LOC100736968 XM_003480212 // chr1 // 100 // 1 // 1 // 0 /// GENSCAN00000010683 // chr1 // 100 // 1 // 1 // 0 main
15183091 chr1 + 414851 414875 chr1(+):414851-414875 1 15183086 532377 222362 XM_003480212 // LOC100736968 XM_003480212 // chr1 // 100 // 1 // 1 // 0 main
15183092 chr1 + 416053 416077 chr1(+):416053-416077 1 15183086 532378 222364 XM_003480212 // LOC100736968 XM_003480212 // chr1 // 100 // 1 // 1 // 0 /// GENSCAN00000010683 // chr1 // 100 // 1 // 1 // 0 main
15183093 chr1 + 417341 417365 chr1(+):417341-417365 1 15183086 532379 222366 XM_003480212 // LOC100736968 XM_003480212 // chr1 // 100 // 1 // 1 // 0 /// GENSCAN00000010683 // chr1 // 100 // 1 // 1 // 0 main
15183095 chr1 + 422326 422350 chr1(+):422326-422350 1 15183086 532381 222370 XM_003480212 // LOC100736968 XM_003480212 // chr1 // 100 // 1 // 1 // 0 main
15183096 chr1 + 423243 423267 chr1(+):423243-423267 1 15183086 532382 222372 XM_003480212 // LOC100736968 ENSSSCT00000004431 // chr1 // 100 // 1 // 1 // 0 /// XM_003480212 // chr1 // 100 // 1 // 1 // 0 main

Total number of rows: 144644

Table truncated, full table size 31813 Kbytes.




Download family Format
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Supplementary data files not provided

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