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Platform GPL21575 Query DataSets for GPL21575
Status Public on Mar 10, 2016
Title Agilent-070156 Human_miRNA_V21.0_Microarray 046064 (Feature Number version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol See manufacturer's web site at: http://www.agilent.com/
 
Description Human only version 21.0

Design creation details:
Created by: Agilent Technologies
Created Date: 10/06/2014

Design Format: 8 x 60K
Number of Distinct microRNA Targets Covered: 2549
Number of Agilent Controls: 2164

Arrays of this design have barcodes that begin with 16070156 or 2570156.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 09, 2016
Last update date Mar 16, 2018
Organization Agilent Technologies
E-mail(s) [email protected]
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (403) GSM2298959, GSM2298960, GSM2298961, GSM2298962, GSM2298963, GSM2298964 
Series (26)
GSE86241 The Role of Serum MicroRNA-6767-5p as a Biomarker for the Diagnosis of Polycystic Ovary Syndrome
GSE89595 Signiture microRNA expression patterns identified in Williams syndrome
GSE89596 MicroRNA biomarkers in blood for Autism spectrum disorder
Relations
Alternative to GPL21576
Alternative to GPL24741 (gene name version)

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
miRNA_ID miRBase ID (miRBase version 21)
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location

Data table
ID COL ROW SPOT_ID CONTROL_TYPE miRNA_ID GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION
1 192 328 miRNABrightCorner30 pos
2 192 326 Blank pos
3 192 324 Blank pos
4 192 322 Blank pos
5 192 320 Blank pos
6 192 318 Blank pos
7 192 316 Blank pos
8 192 314 Blank pos
9 192 312 Blank pos
10 192 310 Blank pos
11 192 308 A_25_P00015821 FALSE hsa-miR-3132 hsa-miR-3132 hsa-miR-3132 mir|hsa-miR-3132|mir|MIMAT0014997 unmapped
12 192 306 NA ignore
13 192 304 A_25_P00015436 FALSE hsa-miR-449c-5p hsa-miR-449c-5p hsa-miR-449c-5p mir|hsa-miR-449c-5p|mir|MIMAT0010251|mir|hsa-miR-449c_v17.0|mir|MIMAT0010251 chr5:54468130-54468116
14 192 302 A_25_P00016311 FALSE hsa-miR-4481 hsa-miR-4481 hsa-miR-4481 mir|hsa-miR-4481|mir|MIMAT0019015 unmapped
15 192 300 A_25_P00019015 FALSE hsa-miR-6788-5p hsa-miR-6788-5p hsa-miR-6788-5p mir|hsa-miR-6788-5p|mir|MIMAT0027476 unmapped
16 192 298 A_25_P00012684 FALSE hsa-miR-514a-3p hsa-miR-514a-3p hsa-miR-514a-3p mir|hsa-miR-514a-3p|mir|MIMAT0002883|mir|hsa-miR-514_v17.0|mir|MIMAT0002883 chrX:146360843-146360827,chrX:146363534-146363518,chrX:146366232-146366216
17 192 296 A_25_P00016265 FALSE hsa-miR-3907 hsa-miR-3907 hsa-miR-3907 mir|hsa-miR-3907|mir|MIMAT0018179 unmapped
18 192 294 A_25_P00014133 FALSE hsa-miR-516b-5p hsa-miR-516b-5p hsa-miR-516b-5p mir|hsa-miR-516b-5p|mir|MIMAT0002859|mir|hsa-miR-516-5p_v9.1|mir|MIMAT0002859|mir|hsa-miR-516b_v17.0|mir|MIMAT0002859 chr19:054228715-054228732,chr19:054240118-054240135,chr19:058920527-058920544,chr19:058931930-058931947
19 192 292 NA ignore
20 192 290 NA ignore

Total number of rows: 62976

Table truncated, full table size 7323 Kbytes.




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