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Platform GPL30164 Query DataSets for GPL30164
Status Public on Dec 31, 2021
Title Agilent-069048 Bifidobacterium bifidum 0140801_Bbi
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Bifidobacterium bifidum
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16069048 or 2569048.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

A different version of this platform with the Agilent Probe Names in the ID column is assigned accession number GPL30211
 
Submission date May 19, 2021
Last update date Mar 23, 2022
Contact name Eiji Ishikawa
E-mail(s) [email protected]
Phone +81-42-577-8960
Organization name Yakult Central Institute
Street address Izumi 5-11
City Kunitachi
State/province Tokyo
ZIP/Postal code 186-8650
Country Japan
 

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location.Bbi_YIT10347_1_1 .gbk
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 CUST_1113_PI429890411 CUST_1113_PI429890411 FALSE Bbi_CDS1095 chr1:1490702-1490761 Aminotransferase TTCTACATCTTCCCCAAGCTCGACGTGAAGAAGTTCAACATCACTGATGATGAGCAGTTC
5 96 156 CUST_454_PI429890411 CUST_454_PI429890411 FALSE Bbi_CDS0444 chr1:615574-615515 putative ATP-dependent helicase CAGCCAATACGAAGACGAGTTCCTGAACGCACAGGAGATGAAGTACTTCAGCAAGAACGG
6 96 154 CUST_738_PI429890411 CUST_738_PI429890411 FALSE Bbi_CDS0726 chr1:1004389-1004448 onserved hypothetical protein (truncated) GATGCAGTATGTCAAGGATGACGGGTCGATCAAGAAGTCCGGCATCGAGGCGATTCTGAC
7 96 152 CUST_738_PI429890411 CUST_738_PI429890411 FALSE Bbi_CDS0726 chr1:1004389-1004448 onserved hypothetical protein (truncated) GATGCAGTATGTCAAGGATGACGGGTCGATCAAGAAGTCCGGCATCGAGGCGATTCTGAC
8 96 150 CUST_319_PI429890411 CUST_319_PI429890411 FALSE Bbi_CDS0312 chr1:423244-423185 threonine dehydratase CTCAACGAGTTCATGGACGATCTGGTCACCGTCACCGAACGCGATATCAACGAGATGATC
9 96 148 CUST_1491_PI429890411 CUST_1491_PI429890411 FALSE Bbi_CDS1470 chr1:1966638-1966697 ribosomal protein L31 CATCGAATGGGAGGACGGCAACACCTATTCCCTGATCAACGTGGAGGTGTCGAGCTACAG
10 96 146 CUST_1039_PI429890411 CUST_1039_PI429890411 FALSE Bbi_CDS1024 chr1:1398497-1398556 3-phosphoshikimate 1-carboxyvinyl transferase AGATCACTCCTGTGCCGGTTGAGCGTCTGCACGGTGAGGTGATGGAATCCTACGCTGATC
11 96 144 CUST_954_PI429890411 CUST_954_PI429890411 FALSE Bbi_CDS0939 chr1:1287541-1287482 "narrowly conserved hypothetical protein,Blon_0723, KEGG: blo:BL0044 narrowly conserved hypothetical protein: BbrY1353: BAD_0962" GATTCACGGCGTGGTCACGTTCCTGGTGTACAAGCCGATTTCGAACCTGCTGAATCGCTG
12 96 142 CUST_1292_PI429890411 CUST_1292_PI429890411 FALSE Bbi_CDS1273 chr1:1705086-1705145 "conserved hypothetical protein,Blon_1005, KEGG: blo:BL1443 hypothetical protein: BbrY1146: BAD_0868" TCTCGTCACAGATCTATCAGAACGTACTGCACGAATCCGGCCGGAAACTGCAGGATGTCG
13 96 140 CUST_1323_PI429890411 CUST_1323_PI429890411 FALSE Bbi_CDS1304 chr1:1742129-1742070 HsdM-like protein of Type I restriction-modification system GTTGTTTGATGAAGAGCGTGAAGTCAAAAAGAACGTTAAGAATCTCCGTTCAGCGCTTGA
14 96 138 CUST_971_PI429890411 CUST_971_PI429890411 FALSE Bbi_CDS0956 chr1:1311084-1311143 replication protein GATGATAAAATACCTGCGCCGACATGGAATGCTCCACTTCCATTGGATCATCGAGTTCAC
15 96 136 CUST_1028_PI429890411 CUST_1028_PI429890411 FALSE Bbi_CDS1013 chr1:1382429-1382488 TerC Tellurium resistance protein GATCTATACGGCGATCAAGCTGGTCGTCGGAGGCGATGATGATGAGGAATACCATGAGAA
16 96 134 CUST_686_PI429890411 CUST_686_PI429890411 FALSE Bbi_CDS0675 chr1:920868-920809 Thioredoxin CTCAATGCACAGGACTTCGAGAAGACCATCACCGACAACAACCTGGTGTTCGTGGATTTC
17 96 132 CUST_1569_PI429890411 CUST_1569_PI429890411 FALSE Bbi_CDS1547 chr1:2073710-2073651 peptide release factor-glutamine N5-methyltransferase AACTGGCGGAGGATATCACGTCTCGACCCGCTGGCCGCCGATAATTATCATCTCGAGCTC
18 96 130 CUST_701_PI429890411 CUST_701_PI429890411 FALSE Bbi_CDS0690 chr1:940956-941015 galactose-1-phosphate uridylyltransferase ATCTCCAAGATGGAAGGCATCGAGCAGATCTTCCCGTTCGAGAACCACGGTGCTGAGATC
19 96 128 CUST_725_PI429890411 CUST_725_PI429890411 FALSE Bbi_CDS0713 chr1:986910-986969 major facilitator superfamily MFS 1 domain AATGTACTGACGTATCGGGGCATTCTGCCACTGCTGGTCGTGTTCGTGGTGTTCAACATG
20 96 126 CUST_664_PI429890411 CUST_664_PI429890411 FALSE Bbi_CDS0651 chr1:888204-888263 hypothetical protein TTCGATCTCAAGAAGGGCAAGACGACGCTCGGACGCATCAGCGGAATCATGGACGACATC

Total number of rows: 15744

Table truncated, full table size 3108 Kbytes.




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Supplementary file Size Download File type/resource
GPL30164_069048_D_GEO_20141116.txt.gz 865.1 Kb (ftp)(http) TXT

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