GEO help: Mouse over screen elements for information.
Status
Public on Jan 15, 2023
Title
Illumina Infinium MethylationEPIC version 2
Technology type
oligonucleotide beads
Distribution
commercial
Organism
Homo sapiens Manufacturer
Illumina, Inc.
Manufacture protocol
See manufacturer's website
Submission date
Jan 15, 2023
Last update date
Jan 15, 2023
Organization
Illumina Inc.
E-mail(s)
[email protected] , [email protected] Phone
1 800 809 4566
URL
http://www.illumina.com Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Samples (876)
GSM6935221 , GSM6935222 , GSM6935223 , GSM6935224 , GSM6935225 , GSM6935226
GSM6935227 ,
GSM6935228 ,
GSM6935229 ,
GSM6935230 ,
GSM6935231 ,
GSM6935232 ,
GSM6935233 ,
GSM6935234 ,
GSM6935235 ,
GSM6935236 ,
GSM6935237 ,
GSM6935238 ,
GSM6935239 ,
GSM6935240 ,
GSM6935241 ,
GSM6935242 ,
GSM6935243 ,
GSM6935244 ,
GSM6935245 ,
GSM6935246 ,
GSM6935247 ,
GSM6935248 ,
GSM6935249 ,
GSM6935250 ,
GSM6935251 ,
GSM6935252 ,
GSM6935253 ,
GSM6935254 ,
GSM6935255 ,
GSM6935256 ,
GSM6935257 ,
GSM6935258 ,
GSM6935259 ,
GSM6935260 ,
GSM6935261 ,
GSM6935262 ,
GSM6935263 ,
GSM6935264 ,
GSM6935265 ,
GSM6935266 ,
GSM6935267 ,
GSM7139626 ,
GSM7139627 ,
GSM7139628 ,
GSM7139629 ,
GSM7139630 ,
GSM7139631 ,
GSM7139632 ,
GSM7139633 ,
GSM7139634 ,
GSM7139635 ,
GSM7139636 ,
GSM7139637 ,
GSM7139638 ,
GSM7139639 ,
GSM7139640 ,
GSM7139641 ,
GSM7139642 ,
GSM7139643 ,
GSM7139644 ,
GSM7139645 ,
GSM7139646 ,
GSM7139647 ,
GSM7139648 ,
GSM7139649 ,
GSM7139650 ,
GSM7139651 ,
GSM7139652 ,
GSM7139653 ,
GSM7139654 ,
GSM7139655 ,
GSM7139656 ,
GSM7139657 ,
GSM7139658 ,
GSM7139659 ,
GSM7139660 ,
GSM7139661 ,
GSM7139662 ,
GSM7139663 ,
GSM7173814 ,
GSM7173815 ,
GSM7173816 ,
GSM7173817 ,
GSM7173818 ,
GSM7173819 ,
GSM7173820 ,
GSM7173821 ,
GSM7173822 ,
GSM7173823 ,
GSM7173824 ,
GSM7173825 ,
GSM7173826 ,
GSM7173827 ,
GSM7173828 ,
GSM7173829 ,
GSM7698435 ,
GSM7698436 ,
GSM7698437 ,
GSM7698438 ,
GSM7698439 ,
GSM7698440 ,
GSM7698441 ,
GSM7698442 ,
GSM7698443 ,
GSM7698444 ,
GSM7698445 ,
GSM7698446 ,
GSM7698447 ,
GSM7698448 ,
GSM7698449 ,
GSM7698450 ,
GSM7698451 ,
GSM7698452 ,
GSM7698453 ,
GSM7698454 ,
GSM7698455 ,
GSM7698456 ,
GSM7698457 ,
GSM7698458 ,
GSM7698459 ,
GSM7698460 ,
GSM7698461 ,
GSM7698462 ,
GSM7698463 ,
GSM7698464 ,
GSM7698465 ,
GSM7698466 ,
GSM7698467 ,
GSM7698468 ,
GSM7698469 ,
GSM7698470 ,
GSM7698471 ,
GSM7698472 ,
GSM7698473 ,
GSM7698474 ,
GSM7866964 ,
GSM7866965 ,
GSM7866966 ,
GSM7866967 ,
GSM7866968 ,
GSM7866969 ,
GSM7866970 ,
GSM7866971 ,
GSM7866972 ,
GSM7866973 ,
GSM7866974 ,
GSM7866975 ,
GSM7866976 ,
GSM7866977 ,
GSM7866978 ,
GSM7866979 ,
GSM7866980 ,
GSM7866981 ,
GSM7866982 ,
GSM7866983 ,
GSM7866984 ,
GSM7866985 ,
GSM7866986 ,
GSM7866987 ,
GSM7866988 ,
GSM7866989 ,
GSM7866990 ,
GSM7866991 ,
GSM7866992 ,
GSM7866993 ,
GSM7866994 ,
GSM7866995 ,
GSM7866996 ,
GSM7866997 ,
GSM7866998 ,
GSM7866999 ,
GSM7867000 ,
GSM7867001 ,
GSM7867002 ,
GSM7867003 ,
GSM7867004 ,
GSM7867005 ,
GSM7867006 ,
GSM7867007 ,
GSM7867008 ,
GSM7867009 ,
GSM7867010 ,
GSM7867011 ,
GSM7867012 ,
GSM7867013 ,
GSM7867014 ,
GSM7867015 ,
GSM7867016 ,
GSM7867017 ,
GSM7867018 ,
GSM7867019 ,
GSM7867020 ,
GSM7867021 ,
GSM7867022 ,
GSM7867023 ,
GSM7867024 ,
GSM7867025 ,
GSM7867026 ,
GSM7867027 ,
GSM7867028 ,
GSM7867029 ,
GSM7867030 ,
GSM7867031 ,
GSM7867032 ,
GSM7867033 ,
GSM7867034 ,
GSM7867035 ,
GSM7867036 ,
GSM7867037 ,
GSM7867038 ,
GSM7867039 ,
GSM7867040 ,
GSM7867041 ,
GSM7867042 ,
GSM7867043 ,
GSM7867044 ,
GSM7867045 ,
GSM7867046 ,
GSM7867047 ,
GSM7867048 ,
GSM7867049 ,
GSM7867050 ,
GSM7867051 ,
GSM7867052 ,
GSM7867053 ,
GSM7867054 ,
GSM7867055 ,
GSM7867056 ,
GSM7867057 ,
GSM7867058 ,
GSM7867059 ,
GSM7867060 ,
GSM7867061 ,
GSM7867062 ,
GSM7867063 ,
GSM7867064 ,
GSM7867065 ,
GSM7867066 ,
GSM7867067 ,
GSM7867068 ,
GSM7867069 ,
GSM7867070 ,
GSM7867071 ,
GSM7867072 ,
GSM7867073 ,
GSM7867074 ,
GSM7867075 ,
GSM7867076 ,
GSM7867077 ,
GSM7867078 ,
GSM7867079 ,
GSM7867080 ,
GSM7867081 ,
GSM7867082 ,
GSM7867083 ,
GSM7867084 ,
GSM7867085 ,
GSM7867086 ,
GSM7867087 ,
GSM7867088 ,
GSM7867089 ,
GSM7867090 ,
GSM7867091 ,
GSM7867092 ,
GSM7867093 ,
GSM7867094 ,
GSM7867095 ,
GSM7867096 ,
GSM7867097 ,
GSM7867098 ,
GSM7867099 ,
GSM7867100 ,
GSM7867101 ,
GSM7867102 ,
GSM7867103 ,
GSM7867104 ,
GSM7867105 ,
GSM7867106 ,
GSM7867107 ,
GSM7867108 ,
GSM7867109 ,
GSM7867110 ,
GSM7867111 ,
GSM7867112 ,
GSM7867113 ,
GSM7867114 ,
GSM7867115 ,
GSM7867116 ,
GSM7867117 ,
GSM7867118 ,
GSM7867119 ,
GSM7867120 ,
GSM7867121 ,
GSM7867122 ,
GSM7867123 ,
GSM7867124 ,
GSM7867125 ,
GSM7867126 ,
GSM7867127 ,
GSM7867128 ,
GSM7867129 ,
GSM7867130 ,
GSM7867131 ,
GSM7867132 ,
GSM7867133 ,
GSM7867134 ,
GSM7867135 ,
GSM7867136 ,
GSM7867137 ,
GSM7867138 ,
GSM7867139 ,
GSM7867140 ,
GSM7867141 ,
GSM7867142 ,
GSM7867143 ,
GSM7867144 ,
GSM7867145 ,
GSM7867146 ,
GSM7867147 ,
GSM7867148 ,
GSM7867149 ,
GSM7867150 ,
GSM7867151 ,
GSM7867152 ,
GSM7867153 ,
GSM7867154 ,
GSM7867155 ,
GSM7867156 ,
GSM7867157 ,
GSM7867158 ,
GSM7867159 ,
GSM7867160 ,
GSM7867161 ,
GSM7867162 ,
GSM7867163 ,
GSM7867164 ,
GSM7867165 ,
GSM7867166 ,
GSM7867167 ,
GSM7867168 ,
GSM7867169 ,
GSM7867170 ,
GSM7867171 ,
GSM7867172 ,
GSM7867173 ,
GSM7867174 ,
GSM7867175 ,
GSM7867176 ,
GSM7867177 ,
GSM7867178 ,
GSM7867179 ,
GSM7867180 ,
GSM7867181 ,
GSM7867182 ,
GSM7867183 ,
GSM7867184 ,
GSM7867185 ,
GSM7867186 ,
GSM7867187 ,
GSM7867188 ,
GSM7867189 ,
GSM7867190 ,
GSM7867191 ,
GSM7867192 ,
GSM7867193 ,
GSM7867194 ,
GSM7867195 ,
GSM7867196 ,
GSM7867197 ,
GSM7867198 ,
GSM7867199 ,
GSM7867200 ,
GSM7867201 ,
GSM7867202 ,
GSM7867203 ,
GSM7867204 ,
GSM7867205 ,
GSM7867206 ,
GSM7867207 ,
GSM7867208 ,
GSM7867209 ,
GSM7867210 ,
GSM7867211 ,
GSM7867212 ,
GSM7867213 ,
GSM7867214 ,
GSM7867215 ,
GSM7867216 ,
GSM7867217 ,
GSM7867218 ,
GSM7867219 ,
GSM7867220 ,
GSM7867221 ,
GSM7867222 ,
GSM7867223 ,
GSM7867224 ,
GSM7867225 ,
GSM7867226 ,
GSM7867227 ,
GSM7867228 ,
GSM7867229 ,
GSM7867230 ,
GSM7867231 ,
GSM7867232 ,
GSM7867233 ,
GSM7867234 ,
GSM7867235 ,
GSM7867236 ,
GSM7867237 ,
GSM7867238 ,
GSM7867239 ,
GSM7867240 ,
GSM7867241 ,
GSM7867242 ,
GSM7867243 ,
GSM7867244 ,
GSM7867245 ,
GSM7867246 ,
GSM7867247 ,
GSM7867248 ,
GSM7867249 ,
GSM7867250 ,
GSM7867251 ,
GSM7867252 ,
GSM7867253 ,
GSM7867254 ,
GSM7867255 ,
GSM7867256 ,
GSM7867257 ,
GSM7867258 ,
GSM7867259 ,
GSM7867260 ,
GSM7867261 ,
GSM7867262 ,
GSM7867263 ,
GSM7867264 ,
GSM7867265 ,
GSM7867266 ,
GSM7867267 ,
GSM7867268 ,
GSM7867269 ,
GSM7867270 ,
GSM7867271 ,
GSM7867272 ,
GSM7867273 ,
GSM7867274 ,
GSM7867275 ,
GSM7867276 ,
GSM7867277 ,
GSM7867278 ,
GSM7867279 ,
GSM7867280 ,
GSM7867281 ,
GSM7867282 ,
GSM7867283 ,
GSM7867284 ,
GSM7867285 ,
GSM7867286 ,
GSM7867287 ,
GSM7867288 ,
GSM7867289 ,
GSM7867290 ,
GSM7867291 ,
GSM7867292 ,
GSM7867293 ,
GSM7867294 ,
GSM7867295 ,
GSM7867296 ,
GSM7867297 ,
GSM7867298 ,
GSM7867299 ,
GSM7867300 ,
GSM7867301 ,
GSM7867302 ,
GSM7867303 ,
GSM7867304 ,
GSM7867305 ,
GSM7867306 ,
GSM7867307 ,
GSM7867308 ,
GSM7867309 ,
GSM7867310 ,
GSM7867311 ,
GSM7867312 ,
GSM7867313 ,
GSM7867314 ,
GSM7867315 ,
GSM7867316 ,
GSM7867317 ,
GSM7867318 ,
GSM7867319 ,
GSM7867320 ,
GSM7867321 ,
GSM7867322 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (17)
GSE222919 Validation of the upgraded EPIC DNA methylation microarray (900K EPIC v2.0) for high-throughput profiling of the human DNA methylome
GSE228820 Evaluating The Infinium Human MethylationEPIC v2 BeadChip
GSE229715 The brain tumor classifications based on machine learning models trained with older version of methylation microarray chip compatible with the new EPIC v2 illumina’s chip.
GSE240469 Characterisation and reproducibility of theHumanMethylationEPIC v2.0 BeadChip for DNAmethylation profiling [EPIC v2]
GSE240482 Characterisation and reproducibility of the HumanMethylationEPIC v2.0 BeadChip for DNAmethylation profiling
GSE246337 DNA methylation profiling of the Biomarkers of Aging Consortium Cohort
GSE252130 DNA methylation classifier to diagnose pancreatic ductal adenocarcinoma metastases from different anatomical sites
GSE254031 Papillary Tumor of the Pineal Region: analysis of DNA methylation profiles and clinical outcomes in 76 cases
GSE261318 NF-κB- and TET2-mediated macrophage reprogramming overrides the anti-inflammatory effects of hypoxia and improves responses in human cancer (DNA methylation II).
GSE261324 NF-κB- and TET2-mediated macrophage reprogramming overrides the anti-inflammatory effects of hypoxia and improves responses in human cancer
GSE270978 Systems Biology to Identify Biomarkers of Neonatal Vaccine Immunogenicity - Papua New Guinea (PNG) Validation cohort [methylation]
GSE272207 Genome-wide DNA methylation profiling reveals a novel hypermethylated biomarker PRKCB in gastric cancer
GSE273176 DNA Methylome Analysis of Human Cancer Cells with STELLA Protein Overexpression and the Xenograft Tumor Tissues from the Mice Treated by the Indicated LNP Formulations
GSE276012 Quantification of tumour-infiltrating immune cells through deconvolution of DNA methylation data in Ewing sarcomas
GSE276957 A longevity-specific bank of induced pluripotent stem cells from centenarians and their offspring
GSE277573 Methylation cytometric pretreatment blood immune profiles with tumor mutation burden as prognostic indicators for survival outcomes in head and neck cancer patients on anti-PD-1 therapy
GSE281429 DNA Methylation profiles of subjects in the Healthy Brain Initiative study.
Data table header descriptions ID SPOT_ID Name AddressA_ID AlleleA_ProbeSeq AddressB_ID AlleleB_ProbeSeq Next_Base Color_Channel col Probe_Type Strand_FR Strand_TB Strand_CO Infinium_Design Infinium_Design_Type CHR MAPINFO Species Genome_Build Source_Seq Forward_Sequence Top_Sequence Rep_Num UCSC_RefGene_Group UCSC_RefGene_Name UCSC_RefGene_Accession UCSC_CpG_Islands_Name Relation_to_UCSC_CpG_Island GencodeV41_Group GencodeV41_Name GencodeV41_Accession Phantom5_Enhancers HMM_Island Regulatory_Feature_Name Regulatory_Feature_Group 450k_Enhancer DMR DNase_Hypersensitivity_NAME Encode_CisReg_Site Encode_CisReg_Site_Evid OpenChromatin_NAME OpenChromatin_Evidence_Count Methyl450_Loci Methyl27_Loci EPICv1_Loci Manifest_probe_match SNP_ID SNP_DISTANCE SNP_MinorAlleleFrequency
Data table ID SPOT_ID Name AddressA_ID AlleleA_ProbeSeq AddressB_ID AlleleB_ProbeSeq Next_Base Color_Channel col Probe_Type Strand_FR Strand_TB Strand_CO Infinium_Design Infinium_Design_Type CHR MAPINFO Species Genome_Build Source_Seq Forward_Sequence Top_Sequence Rep_Num UCSC_RefGene_Group UCSC_RefGene_Name UCSC_RefGene_Accession UCSC_CpG_Islands_Name Relation_to_UCSC_CpG_Island GencodeV41_Group GencodeV41_Name GencodeV41_Accession Phantom5_Enhancers HMM_Island Regulatory_Feature_Name Regulatory_Feature_Group 450k_Enhancer DMR DNase_Hypersensitivity_NAME Encode_CisReg_Site Encode_CisReg_Site_Evid OpenChromatin_NAME OpenChromatin_Evidence_Count Methyl450_Loci Methyl27_Loci EPICv1_Loci Manifest_probe_match SNP_ID SNP_DISTANCE SNP_MinorAlleleFrequency cg25324105_BC11
cg25324105_BC11
cg25324105
1754126
ATTTATAAACTAATAACCCAAAATACATTTCCCAAAAACCTTCACAACCA
99753217
GTTTATAAACTAATAACCCGAAATACATTTCCCAAAAACCTTCGCGACCG
A
Red
R
cg
F
B
C
1
I
chr19
37692358
Human
GRCh38
GTTTGTGGGCTGGTAGCCCGGAATACATTTCCCAGAGGCCTTCGCGGCCG
CGGTTCCGCCGCGTTTGTGGGCTGGTAGCCCGGAATACATTTCCCAGAGGCCTTCGCGGC[CG]ACGTGCTTCGCGCAGGAACGCAGCCGCCTCCCGACTGGAGGACGCGGTAGCGGAGCTGCT
AGCAGCTCCGCTACCGCGTCCTCCAGTCGGGAGGCGGCTGCGTTCCTGCGCGAAGCACGT[CG]GCCGCGAAGGCCTCTGGGAAATGTATTCCGGGCTACCAGCCCACAAACGCGGCGGAACCG
1
TSS200;TSS200;TSS200;TSS200
ZNF781;ZNF781;ZNF781;ZNF781
NR_173332.1;NR_173331.1;NR_173330.1;NR_173329.1
chr19:37691892-37692426
Island
TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200
ENSG00000120784.17;ENSG00000120784.17;ENSG00000120784.17;ENSG00000196381.12;ENSG00000196381.12;ENSG00000196381.12;ENSG00000196381.12
ENST00000587199.5;ENST00000589676.5;ENST00000586732.1;ENST00000358582.9;ENST00000590008.5;ENST00000593040.5;ENST00000585624.1
19:38182603-38183622
Unclassified_Cell_type_specific
TRUE
DMR
EH38D5131145
EH38E3303729|DNase-only;EH38E3303729|Low-DNase;EH38E3303729|PLS;EH38E3303729|PLS/CTCF-bound
1;18;46;22
Het;Quies;TssA;TxWk;TssFlnkU;ZNF/Rpts;TssFlnk;Tx;TssBiv;EnhA2;TssFlnkD
261;34;540;408;120;186;50;42;12;3;7
cg25324105
cg25324105
TRUE
cg25383568_TC11
cg25383568_TC11
cg25383568
79792482
AAACCAAAAAAATAACAAACTACTCACCTTATCAAAATAATTAAAAAACA
69667133
AAACCGAAAAAATAACAAACTACTCACCTTATCGAAATAATTAAAAAACG
C
Grn
G
cg
R
T
C
1
I
chr19
38727081
Human
GRCh38
CGTCCTTCAACCACTTCGACAAGGTGAGCAGCCTGCCACCTCCTCGGCCT
ACCAGATCCTCACCCGCGACGCCAAGGGCATCAGCCAGGAGCAGATGCAGGAGTTCCGGG[CG]TCCTTCAACCACTTCGACAAGGTGAGCAGCCTGCCACCTCCTCGGCCTCTCCCCTCCCGC
GCGGGAGGGGAGAGGCCGAGGAGGTGGCAGGCTGCTCACCTTGTCGAAGTGGTTGAAGGA[CG]CCCGGAACTCCTGCATCTGCTCCTGGCTGATGCCCTTGGCGTCGCGGGTGAGGATCTGGT
1
exon_18;exon_18
ACTN4;ACTN4
NM_001322033.2_2;NM_004924.6_2
chr19:38726890-38727217
Island
exon_18;exon_18;exon_18;exon_11;exon_18;TSS1500;TSS1500
ACTN4;ACTN4;ACTN4;ACTN4;ACTN4;ENSG00000130402.14;ENSG00000130402.14
ENST00000252699.7;ENST00000424234.7;ENST00000440400.2;ENST00000390009.7;ENST00000697712.1;ENST00000497637.5;ENST00000477174.1
19:39217495-39217813
Gene_Associated_Cell_type_specific
TRUE
EH38D5132342
EH38E3304570|dELS;EH38E3304570|DNase-only;EH38E3304570|Low-DNase
5;1;81
Quies;EnhG1;Tx;TxWk;ReprPCWk;EnhG2;ReprPC;EnhA1;EnhA2
689;198;536;49;138;49;1;1;2
cg25383568
cg25383568
TRUE
rs1394936871;rs1415497516;rs1488301961;rs192382222;rs374240053;rs377626307;rs539072997;rs760946329;rs765587455;rs768749756;rs777566567;rs949297283
39;44;27;1;48;45;16;0;40;38;51;37
0;0;0;0;0;0;0;0;0;0;0;0
cg25455143_BC11
cg25455143_BC11
cg25455143
80699190
ATAAAAAAAAATATACAACTAATCCCCCTTTTTCCCACAACTCAAAATCA
7659147
ATAAAAAAAAATATACGACTAATCCCCCTTTTTCCCACAACTCGAAATCG
T
Red
R
cg
R
B
C
1
I
chr19
1591515
Human
GRCh38
GTAAAGGGGGGTGTGCGGCTGGTCCCCCTTTTTCCCACAGCTCGGGGTCG
GTTCTGCCCCTCCTTGGCTCGTGGAAACCACCCGCCCTCACCTGGGCGGTCTCCTGCCCA[CG]ACCCCGAGCTGTGGGAAAAAGGGGGACCAGCCGCACACCCCCCTTTACCCAGGTGCTCGG
GTTCTGCCCCTCCTTGGCTCGTGGAAACCACCCGCCCTCACCTGGGCGGTCTCCTGCCCA[CG]ACCCCGAGCTGTGGGAAAAAGGGGGACCAGCCGCACACCCCCCTTTACCCAGGTGCTCGG
1
chr19:1591428-1591629;chr19:1591999-1593096
Island;N_Shore
FALSE
TssFlnkU;TssFlnkD;TssA;TssFlnk;EnhWk;EnhA1;EnhG2;TxWk
1215;124;240;40;16;14;10;4
cg25455143
cg25455143
TRUE
rs1047130013;rs1051458573;rs1235675713;rs1330158019;rs1372890585;rs181027148;rs35919258;rs563928941;rs72618597;rs745973733;rs899683679;rs913579702;rs920397045;rs926523552;rs941159426;rs982469986
51;34;25;31;29;41;1;33;8;28;26;4;39;24;9;23
0;0;0;0;0;0;0;0.002;0.041;0;0;0;0;0;0;0
cg25459778_BC11
cg25459778_BC11
cg25459778
60797262
AAAAATTTAAAACAAACAACAACAACCATATTAAAAACACATCAAAACCA
65710482
AAAAATTTAAAACAAACAACGACGACCATATTAAAAACGCGTCGAAACCG
C
Grn
G
cg
F
B
C
1
I
chr16
1614581
Human
GRCh38
GGGGATTTGGAACAAACAACGGCGGCCATGTTGAGAGCGCGTCGGGGCCG
GAGCCGCCGAGAGGGGATTTGGAACAAACAACGGCGGCCATGTTGAGAGCGCGTCGGGGC[CG]CTAAACTTCCCGGCCTGCGCCCGCCTCACCGGCCGCCTCCCCTCTCCCGGCCGCAGGATG
CATCCTGCGGCCGGGAGAGGGGAGGCGGCCGGTGAGGCGGGCGCAGGCCGGGAAGTTTAG[CG]GCCCCGACGCGCTCTCAACATGGCCGCCGTTGTTTGTTCCAAATCCCCTCTCGGCGGCTC
1
chr16:1610053-1615094
Island
TSS200
ENSG00000007545.16
ENST00000293925.9
FALSE
EH38D4916808
EH38E3162170|Low-DNase;EH38E3162170|PLS
67;20
TxWk;ReprPCWk;TssA;Quies;TssBiv;TssFlnk;EnhA2;EnhWk;Tx;EnhBiv;ReprPC
510;3;323;268;18;457;31;4;41;4;4
cg25459778
cg25459778
cg25459778
TRUE
rs1028295962;rs1042852826;rs1054305051;rs1163979757;rs1198001812;rs1272891563;rs1286657226;rs1299033407;rs1326019391;rs1332148215;rs1337457517;rs1360222555;rs1421713513;rs1423183448;rs1487797917;rs533763932;rs891630084;rs901281519;rs998695726
1;34;48;46;29;27;5;19;3;2;8;15;32;39;28;6;45;5;0
0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0
cg25487775_BC11
cg25487775_BC11
cg25487775
5799427
AAAAACAACCTAAAAAACAACCCCCTACCCTACTCTACAAAAAAAACACA
89606481
AAAAACAACCTAAAAAACAACCCCCTACCCTACTCTACAAAAAAAACGCG
A
Red
R
cg
F
B
C
1
I
chr2
161237458
Human
GRCh38
AAAGGCAGCCTGGAGAGCAGCCCCCTGCCCTGCTCTACAGAGGGAGCGCG
TGGGGCCACAGGAAAGGCAGCCTGGAGAGCAGCCCCCTGCCCTGCTCTACAGAGGGAGCG[CG]GGTCACCGCTCTAAAGGTGGAGTGGGCACCCGCCAGGTCTCTCCCTCTGTCTCATGACTG
CAGTCATGAGACAGAGGGAGAGACCTGGCGGGTGCCCACTCCACCTTTAGAGCGGTGACC[CG]CGCTCCCTCTGTAGAGCAGGGCAGGGGGCTGCTCTCCAGGCTGCCTTTCCTGTGGCCCCA
1
chr2:161237949-161239684
N_Shore
FALSE
EnhWk;Quies;TssFlnkU;TssBiv;TxWk;TssFlnkD;EnhA1;TssA;TssFlnk;EnhA2;ReprPCWk;EnhBiv;ReprPC;Tx;ZNF/Rpts;EnhG1;EnhG2;Het
356;89;254;75;188;325;186;6;25;133;3;9;3;2;1;4;3;1
cg25487775
cg25487775
TRUE
rs1026366085;rs1044940275;rs1229309650;rs1257308158;rs1284032264;rs1286589749;rs1354547188;rs1473120976;rs558558303;rs889057000;rs907409584;rs949027946
12;31;1;40;9;2;0;51;41;18;22;38
0;0;0;0;0;0;0;0;0;0;0;0
cg25595446_BC11
cg25595446_BC11
cg25595446
65640459
AATAAAAATAACAACAACCAAAACCACAAACTACATCATAAAAATAAACA
39619855
AATAAAAATAACGACAACCGAAACCGCGAACTACATCATAAAAATAAACG
C
Grn
G
cg
F
B
C
1
I
chr19
49677322
Human
GRCh38
GGTGAAGATGGCGGCAGCCGAGGCCGCGAACTGCATCATGGAGGTGAGCG
GGAGTAGGTGCGGGTGAAGATGGCGGCAGCCGAGGCCGCGAACTGCATCATGGAGGTGAG[CG]CTTGGAGCGCCGCCGTGGGCGGGAGGCGGCTTTGGGTCGGTGTTTCACGCCTCTGTGGTG
CACCACAGAGGCGTGAAACACCGACCCAAAGCCGCCTCCCGCCCACGGCGGCGCTCCAAG[CG]CTCACCTCCATGATGCAGTTCGCGGCCTCGGCTGCCGCCATCTTCACCCGCACCTACTCC
1
chr19:49676753-49677789;chr19:49680665-49680915
Island;N_Shelf
exon_1;TSS200;TSS1500
PRMT1;ENSG00000126457.22;ENSG00000126457.22
ENST00000524771.5;ENST00000529836.5;ENST00000526224.5
19:50179402-50180733
Promoter_Associated
TRUE
EH38D5144952
EH38E3313590|Low-DNase;EH38E3313590|PLS;EH38E3313590|PLS/CTCF-bound
2;65;20
Quies;TxWk;TssA;EnhA2;Tx;ReprPCWk;TssFlnk;TssFlnkU;ReprPC
424;241;820;1;144;19;9;3;2
cg25595446
cg25595446
cg25595446
TRUE
rs1010805679;rs1033981140;rs1190261920;rs1330249664;rs1339967373;rs1376247430;rs1379324397;rs1428461806;rs368170311;rs371508595;rs374334189;rs539647606;rs543913812;rs557979749;rs576649607;rs745946763;rs754139419;rs757408833;rs758492716;rs769181104;rs779115593
48;0;15;44;51;16;49;27;42;29;26;50;21;40;24;31;39;36;30;22;32
0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0
cg25623721_TC11
cg25623721_TC11
cg25623721
22762238
CCCATAAACACTACAAACAAAACATATACCTCCTCAAATAAAAAAACACA
59724845
CCCATAAACACTACGAACAAAACGTATACCTCCTCAAATAAAAAAACGCG
C
Grn
G
cg
F
T
C
1
I
chr1
204151819
Human
GRCh38
CGCGTCCTTTCACCTGAGGAGGCACACGCCTTGCCCGCAGTGCTCATGGG
TCTCCTCCATGCCCCATGAGCACTGCGGGCAAGGCGTGTGCCTCCTCAGGTGAAAGGACG[CG]CGCGGCTGAGGGGCCGAAGGGGGCACAGCCATTCCCAGCAGCCCCACCCCCTCGGAGCCG
TCTCCTCCATGCCCCATGAGCACTGCGGGCAAGGCGTGTGCCTCCTCAGGTGAAAGGACG[CG]CGCGGCTGAGGGGCCGAAGGGGGCACAGCCATTCCCAGCAGCCCCACCCCCTCGGAGCCG
1
exon_1;5UTR;exon_1;exon_1;exon_1
ETNK2;ETNK2;ETNK2;ETNK2;ETNK2
NM_001297760.2;NM_001297761.2;NM_001297761.2;NM_001297762.2;NM_018208.4
chr1:204151270-204152433
Island
exon_1;exon_1;TSS1500
ETNK2;ETNK2;ENSG00000143845.15
ENST00000367201.7;ENST00000367202.9;ENST00000429525.1
FALSE
ReprPCWk;TssA;TssBiv;Quies;TssFlnk;TssFlnkU;EnhA1;TssFlnkD;TxWk;ReprPC;EnhBiv;EnhWk;Het
581;314;303;245;111;72;1;16;6;5;4;3;2
cg25623721
cg25623721
TRUE
rs1040513638;rs1157200615;rs1184646146;rs1222662210;rs1233917236;rs1239095554;rs1267576389;rs1281145579;rs1283496552;rs1351170761;rs1358512116;rs1361110172;rs1397911487;rs1434227917;rs1445097987;rs1449311699;rs1558241139;rs540551989;rs559449870;rs755121524;rs867076094;rs879472136;rs924060063;rs977890815
24;5;16;31;14;36;20;43;35;38;4;34;1;47;10;17;9;48;12;1;19;0;2;51
0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0
cg25625370_TC11
cg25625370_TC11
cg25625370
90657380
TACCCTTAAAATCCAAAAAAACAAAATAAATACCCTAATAACAAAATCCA
97674123
TACCCTTAAAATCCGAAAAAACGAAATAAATACCCTAATAACGAAATCCG
A
Red
R
cg
F
T
C
1
I
chr12
129859030
Human
GRCh38
CGGACTCCGTTACTAGGGCACCCATCCCGTTCCCCCGGACTCCAAGGGCA
GAACGGGATGGGTGCCCTTGGAGTCCGGGGGAACGGGATGGGTGCCCTAGTAACGGAGTC[CG]GGGGAACGGGATGGGTGCCCTTGTAACGGAGTCCGGGGGAACGGGATGGGTGCCCTTACA
GAACGGGATGGGTGCCCTTGGAGTCCGGGGGAACGGGATGGGTGCCCTAGTAACGGAGTC[CG]GGGGAACGGGATGGGTGCCCTTGTAACGGAGTCCGGGGGAACGGGATGGGTGCCCTTACA
1
chr12:129855138-129859039
Island
FALSE
EH38D4743952
Quies;Het;ReprPCWk;ZNF/Rpts;TxWk
1250;331;26;44;12
cg25625370
cg25625370
TRUE
rs112010480;rs113156962;rs1165811333;rs1168065696;rs1170465945;rs1177722636;rs1190428956;rs1207977383;rs1210435942;rs1227034345;rs1236659817;rs1248577942;rs1252669474;rs1307584066;rs1321665260;rs1352992820;rs1392087187;rs1417583268;rs1423272388;rs1430561397;rs1446633416;rs1450105381;rs1456513185;rs1482186425;rs1484072876;rs1487903879;rs1566010650;rs1566010680;rs1566010681;rs1566010683;rs181990349;rs184778184;rs188203296;rs28735842;rs78556273
1;28;12;49;12;26;41;34;36;33;40;45;30;17;0;19;13;50;41;14;13;47;7;40;11;35;41;11;11;11;20;10;30;12;6
0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0.007;0;0;0;0;0;0;0;0;0;0;0;0.003;0;0.027;0.330;0
cg25898577_BC11
cg25898577_BC11
cg25898577
43700218
AAACCTCTATATAACTACCAATCAACCCCTCCCCAATAACTAAATCAACA
89642537
AAACCTCTATATAACTACCAATCAACCCCTCCCCGATAACTAAATCAACG
A
Red
R
cg
R
B
C
1
I
chr22
21937869
Human
GRCh38
AAACCTCTGTGTGGCTGCCAGTCAGCCCCTCCCCGGTGACTGGATCAGCG
CCAGCCCACGGACTCCCCATGCCAAGGGCTGCAGCCCCGCAACCTCGCTTCTGGATTCTT[CG]CTGATCCAGTCACCGGGGAGGGGCTGACTGGCAGCCACACAGAGGTTTCAGCCACTCGCT
CCAGCCCACGGACTCCCCATGCCAAGGGCTGCAGCCCCGCAACCTCGCTTCTGGATTCTT[CG]CTGATCCAGTCACCGGGGAGGGGCTGACTGGCAGCCACACAGAGGTTTCAGCCACTCGCT
1
TSS1500
PPM1F-AS1
NR_147620.1
chr22:21938156-21938358;chr22:21933974-21934188
N_Shore;S_Shelf
TSS1500;TSS1500;exon_1;5UTR;TSS1500
ENSG00000224086.6;ENSG00000224086.6;PPM1F;PPM1F;ENSG00000100034.14
ENST00000653280.1;ENST00000458178.2;ENST00000407142.5;ENST00000407142.5;ENST00000623652.1
22:22292195-22293262
Promoter_Associated
TRUE
EH38D5385406
EH38E3469680|DNase-H3K4me3;EH38E3469680|DNase-H3K4me3/CTCF-bound;EH38E3469680|Low-DNase;EH38E3469680|pELS;EH38E3469680|pELS/CTCF-bound
1;2;14;23;47
TxWk;EnhG1;TssFlnkU;Quies;Tx;TssA;EnhWk;EnhA2;EnhG2;EnhA1;TssFlnkD;TssFlnk
240;60;637;394;38;31;104;31;16;92;17;3
cg25898577
cg25898577
TRUE
rs1042159812;rs1170083896;rs1200646945;rs1271552950;rs1338204705;rs1405437586;rs1463594590;rs1477035284;rs555841756;rs566007632;rs61517217;rs979161379
23;38;41;40;0;15;25;39;16;46;1;27
0;0;0;0;0;0;0;0;0;0.002;0.007;0
cg25908985_BC11
cg25908985_BC11
cg25908985
29765438
TCAAACACATTAAAACTAAACTACTTATAAACAAACAACACAAATTTACA
76632191
TCGAACACATTAAAACTAAACTACTTATAAACGAACGACACGAATTTACG
T
Red
R
cg
F
B
C
1
I
chr2
219060343
Human
GRCh38
TCGGGCACATTGGGGCTGAACTGCTTGTAGGCGAGCGGCACGAGTTTGCG
CCCAGGGTCTTCTCGGGCACATTGGGGCTGAACTGCTTGTAGGCGAGCGGCACGAGTTTG[CG]TGGCGGTCGCCGGCGGCTGCCCACCACCCGACCCGGCCCGCAGCCCCATGCCGCCGGCAC
GTGCCGGCGGCATGGGGCTGCGGGCCGGGTCGGGTGGTGGGCAGCCGCCGGCGACCGCCA[CG]CAAACTCGTGCCGCTCGCCTACAAGCAGTTCAGCCCCAATGTGCCCGAGAAGACCCTGGG
1
exon_1
IHH
NM_002181.4
chr2:219057418-219058408;chr2:219060097-219061408
S_Shore;Island
exon_1
IHH
ENST00000295731.7
FALSE
Quies;ReprPC;EnhBiv;TssBiv;TssFlnk;ReprPCWk;TssFlnkD;EnhWk;TxWk;TssFlnkU;TssA;EnhA1
721;233;244;287;11;129;15;8;2;2;10;1
cg25908985
cg25908985
cg25908985
TRUE
rs1201240474;rs121917856;rs1244198503;rs1245966925;rs1329465985;rs1342556433;rs1442704492;rs1471050898;rs1553540620;rs746341121;rs751004659;rs752362743;rs756500862;rs757794469;rs758059980;rs763525609;rs765052865;rs780451969;rs781629669;rs867033547;rs940251856
10;12;38;21;44;32;8;0;26;3;14;18;1;13;17;16;39;1;9;29;7
0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0
cg25910443_TC11
cg25910443_TC11
cg25910443
9686472
AACAAAAAACAAATCAAACAAAATACAACCCCAAACACATATAAATAACA
6695101
AACGAAAAACGAATCAAACAAAATACGACCCCGAACGCGTATAAATAACG
T
Red
R
cg
F
T
C
1
I
chr9
94726671
Human
GRCh38
CGTCATCCACACGCGCCCGGGGCCGCATTCTGCCTGACCCGCCTTCCGCT
GGGGGCGGGCCTAGCGGAAGGCGGGTCAGGCAGAATGCGGCCCCGGGCGCGTGTGGATGA[CG]TCACCCGGCGCGTGCCGGGGTAGCCCGTAGTAACCCCGAGTCTGCGGAAGTGGTGACCCG
GGGGGCGGGCCTAGCGGAAGGCGGGTCAGGCAGAATGCGGCCCCGGGCGCGTGTGGATGA[CG]TCACCCGGCGCGTGCCGGGGTAGCCCGTAGTAACCCCGAGTCTGCGGAAGTGGTGACCCG
1
TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200
AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP;AOPEP
NM_001193331.3;NM_001386071.1;NM_001386073.1;NM_001386072.1;NM_001386076.1;NM_001386075.1;NM_001386074.1;NM_001386061.1;NM_001386062.2;NM_001386067.1;NM_001386069.1;NM_032823.6;NM_001386063.2;NM_001386070.1;NM_001386066.1;NM_001193329.3;NM_001386068.1;NR_169866.1;NR_169865.1;NR_169864.1;NR_169863.2;NR_169862.1
chr9:94726536-94726890
Island
TSS200;TSS200;TSS200;TSS200
ENSG00000288023.1;ENSG00000148120.18;ENSG00000148120.18;ENSG00000148120.18
ENST00000662818.1;ENST00000375315.8;ENST00000277198.6;ENST00000297979.9
9:97488367-97489581
Promoter_Associated
TRUE
EH38D6045461
EH38E3895009|Low-DNase;EH38E3895009|PLS;EH38E3895009|PLS/CTCF-bound
2;79;6
Het;ReprPCWk;TssA;Quies;TssFlnk;ZNF/Rpts;TxWk;EnhA2;EnhWk;ReprPC;TssFlnkU
366;150;734;299;93;8;4;3;2;3;1
cg25910443
cg25910443
cg25910443
TRUE
rs1162105169;rs1386197480;rs1426979443;rs915520431
4;11;8;10
0;0;0;0
cg25983380_BC11
cg25983380_BC11
cg25983380
48626529
CAAAAACACAAATAAAACCTAAACTAACTAAAACACAAACTCAAACAACA
46786857
CGAAAACACGAATAAAACCTAAACTAACTAAAACACGAACTCGAACGACG
A
Red
R
cg
F
B
C
1
I
chr20
58890384
Human
GRCh38
CGGGGGCACGAGTAGGGCCTGGGCTGACTGGGACACGGACTCGAGCGACG
GGGCGCCGCCGCCGGGGGCACGAGTAGGGCCTGGGCTGACTGGGACACGGACTCGAGCGA[CG]AGGACGACGCCTACTACGCGGCGCCGCGCGTTGGGGGCATCGTGTGGCGGCCCGGGCCGC
GCGGCCCGGGCCGCCACACGATGCCCCCAACGCGCGGCGCCGCGTAGTAGGCGTCGTCCT[CG]TCGCTCGAGTCCGTGTCCCAGTCAGCCCAGGCCCTACTCGTGCCCCCGGCGGCGGCGCCC
1
TSS1500;TSS1500;TSS1500;TSS1500;TSS1500
GNAS;GNAS;GNAS;GNAS;GNAS
NM_001309842.2;NM_001077489.4;NM_080426.4;NM_000516.7;NM_001077488.5
chr20:58888597-58892684
Island
exon_1;exon_1;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500
GNAS;GNAS;ENSG00000087460.29;ENSG00000087460.29;ENSG00000087460.29;ENSG00000087460.29;ENSG00000087460.29;ENSG00000087460.29;ENSG00000087460.29;ENSG00000087460.29
ENST00000461152.6;ENST00000683015.1;ENST00000371095.7;ENST00000265620.11;ENST00000354359.12;ENST00000371085.8;ENST00000468895.6;ENST00000371081.5;ENST00000338783.7;ENST00000682803.1
FALSE
Quies;ReprPCWk;TssA;TxWk;TssFlnkU;EnhA1;Het;TssFlnk;EnhA2;Tx;TssFlnkD;TssBiv;ZNF/Rpts;ReprPC
648;73;269;8;511;2;103;30;3;1;7;4;3;1
cg25983380
cg25983380
cg25983380
TRUE
rs1000607463;rs1012056618;rs1023891313;rs1030781271;rs1166976739;rs1341049914;rs1373713796;rs1395464142;rs1410328964;rs1424689242;rs1459309564;rs1462663757;rs1568972908;rs967753432
32;48;45;7;12;49;47;1;43;51;15;36;25;37
0;0;0;0;0;0;0;0;0;0;0;0;0.002;0
cg13221899_TC11
cg13221899_TC11
cg13221899
8755200
CAAAAAAATAATCAAAAAAAACCTCACTATAAAAACCACACACCCTATCA
5716541
CGAAAAAATAATCAAAAAAAACCTCGCTATAAAAACCACGCGCCCTATCG
A
Red
R
cg
R
T
C
1
I
chr13
102774512
Human
GRCh38
CGACAGGGCGCGTGGTTTTCACAGCGAGGCCTCCCCTGATCACCTCCCCG
ACGACGACCGGCTTTTGTCCTGGCTGCTCCCTCCCAGCGTGGGCCGCGTCTCCTCGGGGT[CG]ACAGGGCGCGTGGTTTTCACAGCGAGGCCTCCCCTGATCACCTCCCCGCTCTTCCTGTCC
GGACAGGAAGAGCGGGGAGGTGATCAGGGGAGGCCTCGCTGTGAAAACCACGCGCCCTGT[CG]ACCCCGAGGAGACGCGGCCCACGCTGGGAGGGAGCAGCCAGGACAAAAGCCGGTCGTCGT
1
TSS1500;TSS1500;TSS1500;TSS1500
TEX30;TEX30;TEX30;TEX30
NM_138779.5;NM_001286775.2;NM_001286776.2;NR_104590.2
chr13:102772948-102774537
Island
TSS1500;TSS1500;TSS1500;TSS1500;TSS1500
ENSG00000151287.17;ENSG00000151287.17;ENSG00000151287.17;ENSG00000151287.17;ENSG00000151287.17
ENST00000376032.9;ENST00000376022.5;ENST00000376021.8;ENST00000376029.3;ENST00000487260.1
FALSE
EH38D4789264
EH38E3079105|Low-DNase;EH38E3079105|pELS
80;7
Quies;EnhWk;TxWk;ReprPCWk;TssFlnkU;ReprPC;TssFlnk;EnhA1;ZNF/Rpts;EnhA2;TssFlnkD;EnhBiv;Het;EnhG1
1171;290;87;16;16;13;11;31;1;7;16;2;1;1
cg13221899
cg13221899
TRUE
rs1163165185;rs1221284308;rs1224941338;rs1263013621;rs1289220925;rs1289572583;rs1293702309;rs1296206732;rs1348427783;rs1359659807;rs1361130081;rs1362650272;rs1377180569;rs1432852859;rs1455386066;rs1468312918;rs1566430827;rs55907129;rs576664929;rs577155285;rs61630756;rs919667702;rs964741835;rs974800047
18;42;47;29;35;9;46;49;11;43;7;1;32;2;10;0;40;28;33;25;48;30;1;24
0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0.006;0;0;0.015;0;0;0
cg13332774_TC11
cg13332774_TC11
cg13332774
44618333
ACACTAAAACCAAACAACTCCAATAAACACACAACAACAAAAATAATCCA
52794320
ACACTAAAACCAAACGACTCCGATAAACGCGCGACAACAAAAATAATCCG
C
Grn
G
cg
R
T
C
1
I
chr10
104268870
Human
GRCh38
CGGACCACCTCTGCTGCCGCGCGCCTACCGGAGCCGCTTGGCCCTAGTGC
CTTCACAAAGGCCTCCTGCCGCAAACCTTCAGCGGCCACCAAAGCCCCGGCTGCCGGCGG[CG]GACCACCTCTGCTGCCGCGCGCCTACCGGAGCCGCTTGGCCCTAGTGCTTTCCAGCGGAT
ATCCGCTGGAAAGCACTAGGGCCAAGCGGCTCCGGTAGGCGCGCGGCAGCAGAGGTGGTC[CG]CCGCCGGCAGCCGGGGCTTTGGTGGCCGCTGAAGGTTTGCGGCAGGAGGCCTTTGTGAAG
1
TSS1500;TSS1500;TSS1500
MIR4482;GSTO2;GSTO2
NR_039702.1;NM_001191013.2;NM_183239.2
chr10:104268766-104269289
Island
TSS1500;TSS200;TSS1500
ENSG00000266852.2;ENSG00000065621.15;ENSG00000065621.15
ENST00000583050.2;ENST00000450629.6;ENST00000338595.7
10:106027989-106029477
Promoter_Associated
TRUE
TxWk;Tx;TssA;EnhA2;EnhG1;EnhWk;TssFlnk;Quies;EnhA1;EnhG2;TssFlnkU;TssFlnkD
448;168;774;8;96;47;29;47;17;26;2;1
cg13332774
cg13332774
TRUE
rs1023234873;rs1205743373;rs1232506103;rs1240516156;rs1247551534;rs1287908080;rs1352979442;rs1385892415;rs1403207488;rs45520536;rs533196606;rs777236149;rs865982588;rs895995341;rs968933323;rs978928690;rs984446092
11;9;10;47;28;45;48;25;5;6;21;1;30;4;18;19;40
0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0
cg13406893_TC11
cg13406893_TC11
cg13406893
41693888
AATCACTAAATCATAAATAACAATAACATAAATACCCATCAAAAAAAACA
6623849
AATCACTAAATCATAAATAACGATAACATAAATACCCATCGAAAAAAACG
A
Red
R
cg
R
T
C
1
I
chr12
131084102
Human
GRCh38
CGTTTCCCCCGATGGGCATTTATGTTACCGTCACTCATGATTCAGTGACT
GTTCTTTTTAACCGATGCGAGGTCTTTTATCATATTTCTCTCTCCCACACTGCACTCACC[CG]TTTCCCCCGATGGGCATTTATGTTACCGTCACTCATGATTCAGTGACTGGGCTTGAATGT
ACATTCAAGCCCAGTCACTGAATCATGAGTGACGGTAACATAAATGCCCATCGGGGGAAA[CG]GGTGAGTGCAGTGTGGGAGAGAGAAATATGATAAAAGACCTCGCATCGGTTAAAAAGAAC
1
chr12:131087956-131088400
N_Shelf
FALSE
Het;ReprPCWk;Quies;ReprPC;ZNF/Rpts;TssFlnk;TxWk;Tx;EnhA2;EnhG1
333;97;1100;17;66;1;35;6;7;1
cg13406893
cg13406893
TRUE
rs1033426600;rs1039131861;rs1257634020;rs1306705615;rs1405000741;rs1461853335;rs149282436;rs183027178;rs2293654;rs560748860;rs568492083;rs745739190;rs901514101;rs943457368;rs987887714;rs995769974
8;37;43;36;1;1;31;10;28;12;44;4;0;36;29;9
0;0;0;0;0;0;0.002;0;0.239;0.004;0;0;0;0;0;0
cg23766254_TC11
cg23766254_TC11
cg23766254
46803301
CCAAATAACCCAACATCTACAAACACTAAAAATCAAACTAAAAAAAAACA
69798384
CCGAATAACCCGACATCTACGAACGCTAAAAATCGAACTAAAAAAAAACG
C
Grn
G
cg
F
T
C
1
I
chr17
44354491
Human
GRCh38
CGCTTTTCCCCAGCCCGACCCCCAGCGCCCGCAGATGCCGGGCCACTCGG
CGCCCCCCGGGCCCGAGTGGCCCGGCATCTGCGGGCGCTGGGGGTCGGGCTGGGGAAAAG[CG]CGCGCCGGGCCGGGTGCCGTGCCCTCCGGCGGGGCCGGCTCGTCGCCCACGCCGGCGGCG
CGCCCCCCGGGCCCGAGTGGCCCGGCATCTGCGGGCGCTGGGGGTCGGGCTGGGGAAAAG[CG]CGCGCCGGGCCGGGTGCCGTGCCCTCCGGCGGGGCCGGCTCGTCGCCCACGCCGGCGGCG
1
exon_8
FAM171A2
NM_198475.3
chr17:44353646-44355187
Island
exon_8
FAM171A2
ENST00000293443.12
FALSE
DMR
Quies;TssFlnk;TssA;Tx;EnhA2;EnhWk;TxWk;ReprPCWk;TssFlnkD;ReprPC;EnhG1;EnhBiv;TssBiv;EnhG2;Het;ZNF/Rpts
946;369;68;5;5;16;157;75;8;5;3;1;2;1;1;1
cg23766254
cg23766254
TRUE
rs1035268717;rs111535014;rs1171326508;rs1243894741;rs1291209034;rs1291797854;rs1337346864;rs1428637049;rs1433740679;rs1455811397;rs897066539;rs960547205;rs990989914;rs994065319
29;34;51;0;37;12;11;39;35;25;49;28;14;46
0;0;0;0;0;0;0;0;0;0;0;0;0;0
cg23845507_TC11
cg23845507_TC11
cg23845507
5781897
CCCAAAAAAAACCAATCCTTCCCAACTAAACTCACAACCAACACTAACCA
41791243
CCCGAAAAAAACCGATCCTTCCCGACTAAACTCGCGACCAACGCTAACCG
A
Red
R
cg
F
T
C
1
I
chr1
91501174
Human
GRCh38
CGGCCAGCGCTGGCCGCGAGCTCAGCCGGGAAGGACCGGCTTCCCTCGGG
TTCGGTCTCTGGCCCGAGGGAAGCCGGTCCTTCCCGGCTGAGCTCGCGGCCAGCGCTGGC[CG]GCGGATTCCCATTCATTCACCCTTCTCCTCCTCCGCCCAGTACTCGTGGCCAGGGTCGTA
TTCGGTCTCTGGCCCGAGGGAAGCCGGTCCTTCCCGGCTGAGCTCGCGGCCAGCGCTGGC[CG]GCGGATTCCCATTCATTCACCCTTCTCCTCCTCCGCCCAGTACTCGTGGCCAGGGTCGTA
1
5UTR;exon_1
CDC7;CDC7
NM_001134420.2;NM_001134420.2
chr1:91500706-91501442
Island
exon_1;exon_1;exon_1;5UTR;5UTR
CDC7;CDC7;CDC7;CDC7;CDC7
ENST00000428239.5;ENST00000426137.1;ENST00000497611.1;ENST00000428239.5;ENST00000426137.1
1:91966285-91967516
Promoter_Associated
TRUE
EH38D4401203
EH38E2824335|Low-DNase;EH38E2824335|PLS;EH38E2824335|PLS/CTCF-bound
4;72;11
Quies;ReprPCWk;TssA;TssFlnk;TssFlnkU;TxWk
758;65;820;8;5;7
cg23845507
cg23845507
cg23845507
TRUE
rs1444299160;rs1485204045
51;50
0;0
cg23845773_BC11
cg23845773_BC11
cg23845773
52810459
CCATAATCAAAAAACATAAAACCATAAACATCAAAACCAAATCTTAAACA
64737826
CCGTAATCGAAAAACATAAAACCATAAACGTCGAAACCAAATCTTAAACG
T
Red
R
cg
R
B
C
1
I
chr11
6612508
Human
GRCh38
CCGTAGTCGAGGGACATAGGGCCATAAACGTCGAAGCCAGGTCTTGAGCG
ACCGGAACCAGCGTGCGTCTGGCTCTCCTCCGCCGCTCTGGGACACCTCATTCTGTCTGA[CG]CTCAAGACCTGGCTTCGACGTTTATGGCCCTATGTCCCTCGACTACGGGTTGCCTGCCTG
ACCGGAACCAGCGTGCGTCTGGCTCTCCTCCGCCGCTCTGGGACACCTCATTCTGTCTGA[CG]CTCAAGACCTGGCTTCGACGTTTATGGCCCTATGTCCCTCGACTACGGGTTGCCTGCCTG
1
TSS1500
TAF10
NM_006284.4
chr11:6611648-6612556
Island
exon_1;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500
TAF10;ENSG00000166337.11;ENSG00000166337.11;ENSG00000166337.11;ENSG00000166337.11;ENSG00000166337.11
ENST00000531760.2;ENST00000299424.9;ENST00000616342.1;ENST00000693612.1;ENST00000527248.3;ENST00000532344.1
11:6611857-6612670
11:6632465-6634344
Promoter_Associated
TRUE
TxWk;TssA;Quies;TssFlnkU;Tx;EnhA2
462;678;364;154;4;1
cg23845773
cg23845773
cg23845773
TRUE
rs1023347610;rs1193139157;rs1208698735;rs1247385143;rs1358069109;rs1398853303;rs1418869247;rs1444604264;rs1473628474;rs2659862;rs3176307;rs545564358;rs896246676;rs905427454;rs923318007;rs964485100
33;49;42;2;20;17;43;38;41;21;24;28;4;50;27;8
0;0;0;0;0;0;0;0;0;0.010;0;0;0;0;0;0
cg26224791_TC11
cg26224791_TC11
cg26224791
20633423
CTAACCTACTTCCAAAACAACATAATATTTCTAATCTACCTATACCAACA
73604387
CTAACCTACTTCCGAAACGACGTAATATTTCTAATCTACCTATACCAACG
A
Red
R
cg
R
T
C
1
I
chr5
1320619
Human
GRCh38
CGCTGGTACAGGTAGACCAGAAACACCACGTCGTCCCGGAAGCAGGCCAG
AGCAGCAGCCACGCCGCTGAGACGGAGCAACGGCCGAGCATACGCAGCCGCACTCACCAC[CG]CTGGTACAGGTAGACCAGAAACACCACGTCGTCCCGGAAGCAGGCCAGCCGGTGAGACGT
ACGTCTCACCGGCTGGCCTGCTTCCGGGACGACGTGGTGTTTCTGGTCTACCTGTACCAG[CG]GTGGTGAGTGCGGCTGCGTATGCTCGGCCGTTGCTCCGTCTCAGCGGCGTGGCTGCTGCT
1
exon_16
CLPTM1L
NM_030782.5_2
exon_16;exon_13;exon_7;exon_15;exon_7;exon_3;exon_8;exon_5;exon_3;exon_8
CLPTM1L;CLPTM1L;CLPTM1L;CLPTM1L;CLPTM1L;CLPTM1L;CLPTM1L;CLPTM1L;CLPTM1L;CLPTM1L
ENST00000320895.10;ENST00000507807.3;ENST00000503042.5;ENST00000630539.1;ENST00000503534.5;ENST00000515719.5;ENST00000506641.5;ENST00000511268.6;ENST00000512451.5;ENST00000507195.5
FALSE
EH38D5624704
Tx;EnhG1;TxWk;Quies;EnhG2;EnhA1;EnhA2
1503;44;92;14;6;2;2
cg26224791
cg26224791
TRUE
rs1027664698;rs1257427948;rs1299783227;rs1314416338;rs1327248678;rs1331586263;rs1346369634;rs1377024290;rs1385186059;rs140841923;rs1420835800;rs143242019;rs1439283017;rs1477554460;rs1480687325;rs1561226883;rs199514346;rs369802425;rs771252174;rs778022626;rs952234952;rs963367224
10;9;0;1;37;51;31;29;45;23;40;32;16;26;33;23;4;50;36;28;12;25
0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0
cg10978402_TC11
cg10978402_TC11
cg10978402
28630327
AACAAAATAACCACACAAAACATATCCCAAAAATTAAAAATCTAAATACA
34625132
AACAAAATAACCGCGCAAAACGTATCCCGAAAATTAAAAATCTAAATACG
C
Grn
G
cg
F
T
C
1
I
chr15
90388758
Human
GRCh38
CGTACCCAGACCCCCAATCCCCGGGACACGCCCTGCGCGGTCATCCTGCC
CTAGAGTGAGGTGGCAGGATGACCGCGCAGGGCGTGTCCCGGGGATTGGGGGTCTGGGTA[CG]CGGGCTCTGCCCGTTTCGTGGAAAGGCGCTGCCCTAGTGTTGCCTGCGGGGTAGACCCAA
CTAGAGTGAGGTGGCAGGATGACCGCGCAGGGCGTGTCCCGGGGATTGGGGGTCTGGGTA[CG]CGGGCTCTGCCCGTTTCGTGGAAAGGCGCTGCCCTAGTGTTGCCTGCGGGGTAGACCCAA
1
chr15:90387930-90388787
Island
15:90930733-90932443
Promoter_Associated
TRUE
TxWk;TssA;Quies;EnhA2;EnhA1;EnhG1;EnhWk;TssFlnkU;Tx;TssFlnk;EnhG2
411;804;111;51;206;10;17;17;17;17;2
cg10978402
cg10978402
cg10978402
TRUE
rs1020049840;rs1033955048;rs1176745144;rs1217910615;rs1237029541;rs1271083618;rs1278527786;rs1367359303;rs1433190369;rs1440673196;rs1567109595;rs531764853;rs539627940;rs758625193;rs893174712;rs958689035;rs959649159;rs981268854
20;18;31;25;44;40;15;27;45;1;0;23;8;21;46;8;3;9
0;0;0;0;0;0;0;0;0;0;0;0;0.001;0;0;0;0;0
937691 959113 Kbytes .Supplementary data files not provided
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