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Platform GPL4147 Query DataSets for GPL4147
Status Public on Aug 17, 2006
Title Agilent-014798 Arabidopsis Whole Genome ChIP-on-Chip Set 244K, Microarray 1 of 2 (G4495A)
Technology type in situ oligonucleotide
Distribution commercial
Organism Arabidopsis thaliana
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4495A
 
Description
Arabidopsis Whole Genome ChIP-on-Chip Set 244K, Microarray 1 of 2

Arrays of this design have barcodes that begin with 16014798 or 2514798.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Aug 17, 2006
Last update date Aug 17, 2006
Organization Agilent Technologies
E-mail(s) [email protected]
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (2) GSM840650, GSM840652
Series (2)
GSE34033 Identification of target genes of ABI3 [Agilent 2x244k]
GSE34043 Identification of target genes of ABI3

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION
1 267 912 AtCGHBrightCorner pos
2 267 910 DarkCorner pos
3 267 908 DarkCorner pos
4 267 906 A_85_P00299257 FALSE chr2:008573620-008573667
5 267 904 A_85_P00181280 FALSE chr1:023155783-023155828
6 267 902 A_85_P00251934 FALSE chr2:000739115-000739174
7 267 900 A_85_P00316914 FALSE chr2:010640939-010640998
8 267 898 A_85_P00095498 FALSE chr1:010774003-010774062
9 267 896 A_85_P00061446 FALSE chr1:006877166-006877225
10 267 894 A_85_P00156084 FALSE chr1:020272242-020272301
11 267 892 A_85_P00076234 FALSE chr1:008552235-008552294
12 267 890 A_85_P00325848 FALSE chr2:011666586-011666645
13 267 888 A_85_P00009013 FALSE chr1:001005696-001005755
14 267 886 A_85_P00166450 FALSE chr1:021450574-021450633
15 267 884 A_85_P00381730 FALSE chr2:017989922-017989981
16 267 882 A_85_P00140992 FALSE chr1:018516543-018516602
17 267 880 A_85_P00403690 FALSE chr3:000737833-000737892
18 267 878 A_85_P00406914 FALSE chr3:001093326-001093383
19 267 876 A_85_P00387698 FALSE chr2:018655567-018655626
20 267 874 A_85_P00417087 FALSE chr3:002239773-002239817

Total number of rows: 243504

Table truncated, full table size 15546 Kbytes.




Download family Format
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Supplementary data files not provided
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