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| Status |
Public on Jul 20, 2007 |
| Title |
[Ce25b_MR] Affymetrix C. elegans Tiling 1.0R Array |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Caenorhabditis elegans |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
see manufacturer's web site
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| Description |
Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
The GeneChip C. elegans Tiling 1.0R Array is designed for identifying novel transcripts or mapping sites of protein/DNA interaction in chromatin immunoprecipitation (ChIP) experiments, or other Caenorhabditis elegans whole-genome experiments. The C. elegans 1.0R Array is a single array comprised of over 3.2 million perfect match/mismatch probe pairs tiled through the complete non-repetitive Caenorhabditis elegans genome. Sequences used in the design of the C. elegans Tiling 1.0R Array were selected from the WormBase web site, www.wormbase.org, release WS140, March 26, 2005.
Probes are tiled at an average resolution of 25 base pair, as measured from the central position of adjacent 25-mer oligos.
BPMAP and other files can be downloaded from the Affymetrix Web site below.
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| Web link |
http://www.affymetrix.com/products/arrays/specific/celegans_tiling.affx
http://www.affymetrix.com/analysis/index.affx
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| Submission date |
Jul 20, 2007 |
| Last update date |
Apr 30, 2013 |
| Organization |
Affymetrix, Inc. |
| E-mail(s) |
[email protected], [email protected]
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| Phone |
888-362-2447
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| URL |
http://www.affymetrix.com/index.affx
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| Street address |
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| City |
Santa Clara |
| State/province |
CA |
| ZIP/Postal code |
95051 |
| Country |
USA |
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| Samples (369)
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GSM212071, GSM212072, GSM212073, GSM396358, GSM396359, GSM396360
GSM396361, GSM396362, GSM396363, GSM396364, GSM396365, GSM396366, GSM396367, GSM396368, GSM396369, GSM396370, GSM396371, GSM396372, GSM396373, GSM396374, GSM396375, GSM396376, GSM396377, GSM396378, GSM396379, GSM396380, GSM396381, GSM396382, GSM396383, GSM396384, GSM396385, GSM396386, GSM396387, GSM396388, GSM396389, GSM396390, GSM396391, GSM396392, GSM396393, GSM396394, GSM396395, GSM396396, GSM396397, GSM396398, GSM396399, GSM396400, GSM396401, GSM396402, GSM396403, GSM396404, GSM396405, GSM396406, GSM396407, GSM396408, GSM396409, GSM396410, GSM396411, GSM396412, GSM396413, GSM396414, GSM396415, GSM396416, GSM396417, GSM453630, GSM453631, GSM455558, GSM455559, GSM462653, GSM462654, GSM462655, GSM462656, GSM462657, GSM462658, GSM462659, GSM462660, GSM462661, GSM462662, GSM462663, GSM462664, GSM462665, GSM464632, GSM464633, GSM571416, GSM571417, GSM571418, GSM571419, GSM571420, GSM571421, GSM571422, GSM571423, GSM571424, GSM571425, GSM571426, GSM571427, GSM571428, GSM571429, GSM571430, GSM571431, GSM571432, GSM571433, GSM571434, GSM571435, GSM571436, GSM571437, GSM571438, GSM571439, GSM571440, GSM571441, GSM571442, GSM571443, GSM571444, GSM571445, GSM571446, GSM571447, GSM571448, GSM571449, GSM571450, GSM571451, GSM571452, GSM571453, GSM571454, GSM571455, GSM571456, GSM571457, GSM571458, GSM571459, GSM571460, GSM571461, GSM571462, GSM571463, GSM571464, GSM571465, GSM571466, GSM571467, GSM571468, GSM571469, GSM571470, GSM571471, GSM571472, GSM571473, GSM571474, GSM571475, GSM571476, GSM571477, GSM571478, GSM571479, GSM571480, GSM571481, GSM571482, GSM571483, GSM571484, GSM571485, GSM571486, GSM571487, GSM571488, GSM571489, GSM571490, GSM571491, GSM571492, GSM571493, GSM571494, GSM571495, GSM571496, GSM571497, GSM571498, GSM571499, GSM571500, GSM571501, GSM571502, GSM571503, GSM571504, GSM571505, GSM571506, GSM571507, GSM571508, GSM571509, GSM571510, GSM571511, GSM571512, GSM571513, GSM571514, GSM571515, GSM571516, GSM571517, GSM571518, GSM571519, GSM571520, GSM571521, GSM571522, GSM571523, GSM571524, GSM571525, GSM571526, GSM571527, GSM571528, GSM571529, GSM571530, GSM571531, GSM571532, GSM571533, GSM571534, GSM571535, GSM571536, GSM571537, GSM571538, GSM571539, GSM571540, GSM571541, GSM571542, GSM580622, GSM580623, GSM580624, GSM580625, GSM580626, GSM580627, GSM580628, GSM580629, GSM586712, GSM586713, GSM586714, GSM586715, GSM586716, GSM586717, GSM591413, GSM591414, GSM591415, GSM591416, GSM591417, GSM591418, GSM591419, GSM591420, GSM591421, GSM591422, GSM591423, GSM591424, GSM591425, GSM591426, GSM624415, GSM624416, GSM624417, GSM624418, GSM624419, GSM624420, GSM624421, GSM624422, GSM624423, GSM700906, GSM700907, GSM700908, GSM700909, GSM819242, GSM819243, GSM819244, GSM819245, GSM819246, GSM819247, GSM819248, GSM819249, GSM819250, GSM819251, GSM819252, GSM819253, GSM819254, GSM819255, GSM819256, GSM819257, GSM819258, GSM819259, GSM819260, GSM819261, GSM819262, GSM819263, GSM819264, GSM819265, GSM819266, GSM819267, GSM819268, GSM819269, GSM819270, GSM819271, GSM819272, GSM833091, GSM833092, GSM833093, GSM833094, GSM833095, GSM833096, GSM833097, GSM833098, GSM833099, GSM833100, GSM833101, GSM833102, GSM899505, GSM899506, GSM899507, GSM899508, GSM899509, GSM899510, GSM992583, GSM992584, GSM992585, GSM992586, GSM992587, GSM992588, GSM992589, GSM992590, GSM992591, GSM992592, GSM992593, GSM992594, GSM992595, GSM992596, GSM992597, GSM992598, GSM992599, GSM992600, GSM992601, GSM992602, GSM992603, GSM992604, GSM992605, GSM992606, GSM992607, GSM992608, GSM992609, GSM992610, GSM992611, GSM992612, GSM992613, GSM992614, GSM1198841, GSM1198842, GSM1198843, GSM1198844, GSM1198845, GSM1198846, GSM1198847, GSM1198848, GSM1198849, GSM1198850, GSM1198851, GSM1198852, GSM1198853, GSM1198854, GSM1198855, GSM1198856, GSM1198857, GSM1198858, GSM1198859, GSM1198860, GSM1198861, GSM1198862, GSM1198863, GSM1198864, GSM1534612, GSM1534613, GSM1534614, GSM1534615, GSM1534616, GSM1534617, GSM1534618, GSM1534619, GSM1563043, GSM1563044, GSM1563045, GSM1563046, GSM1563047, GSM1563048
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| Series (71)
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| GSE8543 |
Mapping the C. elegans non-coding transcriptome with a whole genome tiling microarray |
| GSE15778 |
Global genetic robustness of the alternative splicing machinery in C. elegans |
| GSE18132 |
Dynamic O-GlcNAc cycling at promoters of C. elegans genes regulating Longevity, Stress, and Immunity |
| GSE18141 |
Gene expression profile of csr-1(tm892) animals compared to wild type |
| GSE18167 |
Gene expression in csr-1 mutants and sequencing of sRNAs from CSR-1 IP complexes and csr-1 and ego-1 mutants |
| GSE18230 |
Expression comparison between C. elegans drh-3(ne4253) and wild-type |
| GSE18231 |
WAGO pathway |
| GSE18611 |
O-GlcNAc Chromatin Marks from C. elegans L1 animals |
| GSE18719 |
Gene expression profile of alg-3(tm1155);alg-4(ok1041) animals compared to wild type |
| GSE18731 |
AGO pathway |
| GSE23245 |
embryo panneural tiling array |
| GSE23246 |
embryo all cells reference tiling array |
| GSE23247 |
embryo intestine tiling array |
| GSE23248 |
embryo coelomocytes tiling array |
| GSE23249 |
embryo AVA neurons tiling array |
| GSE23250 |
L3-L4_PVD_OLL_neuron_tiling_array |
| GSE23251 |
L2_reference_tiling_array |
| GSE23252 |
L2_panneural_tiling_array |
| GSE23253 |
L2_intestine_tiling_array |
| GSE23254 |
L2_excretory_cell_tiling_array |
| GSE23255 |
L2_body_wall_muscle_tiling_array |
| GSE23256 |
L2_GABA_motor_neurons_tiling_array |
| GSE23257 |
embryo dopaminergic neurons tiling array |
| GSE23258 |
embryo_GABA_motor_neurons_tiling_array |
| GSE23259 |
L2_A-class_neurons_tiling_array |
| GSE23260 |
embryo body wall muscle tiling array (v2) |
| GSE23261 |
mid-L2_25dC_14hrs_post-L1_N2_tiling_array |
| GSE23262 |
mid-L4_25dC_36hrs_post-L1_N2_tiling_array |
| GSE23263 |
mid-L3_25dC_25hrs_post-L1_N2_tiling_array |
| GSE23264 |
young_adult_25dC_42hrs_post-L1_N2_tiling_array |
| GSE23265 |
early_embryo_20dC_0-4hrs_post-fertilization_N2_tiling_array |
| GSE23266 |
mid-L2_polA_enriched_20dC_14hrs_post-L1_N2_tiling_array |
| GSE23267 |
male_mid_L4_25dC_36hrs_post-L1_CB4689_tiling_array |
| GSE23268 |
late_embryo_20dC_6-12hrs_post-fertilization_N2_tiling_array |
| GSE23269 |
gonad-only_young_adult_20dC_42hrs_post-L1_N2_tiling_array |
| GSE23270 |
L1_20dC_0hrs_post-L1_N2_tiling_array |
| GSE23271 |
soma-only_mid-L4_25dC_36hrs_post-L1_JK1107_tiling_array |
| GSE23272 |
pathogen_Pluminscens_25dC_24hr_exposure_post-adulthood_N2_tiling_array |
| GSE23273 |
pathogen_Efaecalis_25dC_24hr_exposure_post-adulthood_N2_tiling_array |
| GSE23274 |
pathogen_Smarcescens_25dC_48hr_exposure_post-adulthood_N2_tiling_array |
| GSE23275 |
pathogen_Smarcescens_25dC_24hr_exposure_post-adulthood_N2_tiling_array |
| GSE23276 |
pathogen_controlOP50_25dC_48hr_exposure_post-adulthood_N2_tiling_array |
| GSE23277 |
pathogen_controlOP50_25dC_24hr_exposure_post-adulthood_N2_tiling_array |
| GSE23278 |
embryo A-class motor neurons tiling array |
| GSE23279 |
L3-L4_dopaminergic_neuron_tiling_array |
| GSE23280 |
Young Adult reference tiling array |
| GSE23281 |
L2_coelomocytes_tiling_array |
| GSE23282 |
L2 glutamate receptor expressing neurons tiling array |
| GSE23283 |
L3-L4_reference_tiling_array |
| GSE23284 |
Young Adult Cephalic sheath (CEPsh) tiling array |
| GSE23285 |
embryo germline precursor cells tiling array |
| GSE23286 |
embryo hypodermal cells tiling array |
| GSE23287 |
L3-L4_hypodermis_tiling_array |
| GSE23667 |
Array-based cross-species hybridization between genera of Rhabditidae (Nematoda) |
| GSE23769 |
Embryo BAG neurons tiling array |
| GSE23770 |
Embryo pharyngeal muscle tiling array |
| GSE24023 |
Expression profile analysis of C. elegans intermediate sized non-coding transcriptome |
| GSE25349 |
embryo PVC neurons tiling array |
| GSE25350 |
embryo 0h reference tiling array |
| GSE25351 |
embryo AVE neurons tiling array |
| GSE28350 |
Genome-wide identification of DAF-12 binding sites in Caenorhabditis elegans |
| GSE33081 |
Identification of GLD-1 target mRNAs |
| GSE33082 |
mRNA expression analysis in wild-type, gld-1 and cgh-1 mutant animals |
| GSE33083 |
Polysome profiling of wild-type and gld-1 mutant animals |
| GSE33084 |
GLD-1 mRNA regulation |
| GSE33700 |
Transcriptome analysis of hpl-2(tm1489) vs wild-type worms at mixed embryonic and third larval stages |
| GSE36713 |
mRNA expression analysis in mock and cgh-1(RNAi) animals |
| GSE49395 |
Genome-wide profiling of C. elegans gonadal RNA |
| GSE62860 |
Polysome profiling of glp-4 mutant animals |
| GSE62861 |
Functional characterization of C. elegans Y-box binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes |
| GSE64024 |
mRNA expression analysis in glp-4(bn2); let-7(wild-type) and glp-4(bn2); let-7(mn112) animals |
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| Relations |
| Alternative to |
GPL17100 |
| Supplementary data files not provided |
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