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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 01, 2008 |
| Title |
Streptococcus pneumoniae, multi strain 7k version7 (full layout) |
| Technology type |
mixed spotted oligonucleotide/cDNA |
| Distribution |
non-commercial |
| Organism |
Streptococcus pneumoniae |
| Manufacturer |
university of Groningen |
| Manufacture protocol |
ArrayIt superamine slides spotted with a Genpak-array21 spotter.
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| Contributor(s) |
de Jong A |
| Submission date |
Dec 12, 2007 |
| Last update date |
Jan 02, 2015 |
| Contact name |
Anne de Jong |
| E-mail(s) |
[email protected]
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| Phone |
+31 50 363 2047
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| Organization name |
university of Groningen
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| Department |
Molecular Genetics
|
| Street address |
Nijenborgh 7
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| City |
Groningen |
| ZIP/Postal code |
9747 AG |
| Country |
Netherlands |
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| Samples (55)
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GSM249021, GSM249022, GSM249023, GSM249024, GSM339551, GSM340483
GSM340484, GSM340485, GSM340486, GSM340487, GSM537208, GSM537209, GSM537210, GSM537211, GSM537212, GSM537213, GSM537214, GSM537215, GSM537216, GSM537217, GSM537218, GSM537219, GSM537220, GSM537221, GSM537222, GSM537223, GSM537224, GSM537225, GSM537226, GSM537227, GSM537228, GSM537229, GSM537230, GSM537231, GSM537232, GSM537233, GSM537234, GSM537235, GSM537236, GSM537237, GSM537238, GSM537239, GSM537240, GSM537241, GSM537242, GSM537243, GSM537244, GSM537245, GSM537246, GSM537247, GSM537248, GSM537249, GSM537250, GSM537251, GSM537252
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| Series (3) |
| GSE9850 |
Wild type vs glnPA double mutant |
| GSE13505 |
Role of PsaR of Streptococcus pneumoniae D39 and TIGR4 in global gene expression and virulence |
| GSE21729 |
Genome-wide identification of Streptococcus pneumoniae genes essential for the development of experimental meningitis |
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| Relations |
| Alternative to |
GPL9459 |
| Data table header descriptions |
| ID |
|
| LOCAL_ID |
Local ID for intenal control |
| GR |
Grid Row |
| GC |
Grid Column |
| SR |
Spot Row |
| SC |
Spot Column |
| SEQUENCE |
Sequence of Amplicon or Oligo |
| DESCRIPTION |
Description of the probe |
| AMPLICON |
Name of Amplicon |
| PROT_NP |
Deduced protein NP number |
| GI |
GI number, if available |
| ORF |
|
| SPOT_ID |
|
| FUNCTION |
Description of potential function |
| Data table |
| ID |
LOCAL_ID |
GR |
GC |
SR |
SC |
SEQUENCE |
DESCRIPTION |
AMPLICON |
PROT_NP |
GI |
ORF |
SPOT_ID |
FUNCTION |
| NT05SP0001_rep1 |
5339 |
5 |
1 |
9 |
11 |
TAACAACGAACTTACTCTTAACCGGGAGAATGGTGCGCTTCTGTATCAGGTCCTTGAACAACCAGAGTAG |
NT05SP0001 |
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|
|
|
TIGR:NT05SP0001 |
|
| NT05SP0001_rep2 |
5501 |
5 |
1 |
18 |
11 |
TAACAACGAACTTACTCTTAACCGGGAGAATGGTGCGCTTCTGTATCAGGTCCTTGAACAACCAGAGTAG |
NT05SP0001 |
|
|
|
|
TIGR:NT05SP0001 |
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| NT05SP0005_rep1 |
6817 |
6 |
2 |
1 |
13 |
TCATTCCTAGGCGTATTTATGCTATTTTTCTCTGGAAAACATGAGTATTCAGCCAGTCAAAAGGAGCTGA |
NT05SP0005 |
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|
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|
TIGR:NT05SP0005 |
|
| NT05SP0005_rep2 |
6979 |
6 |
2 |
10 |
13 |
TCATTCCTAGGCGTATTTATGCTATTTTTCTCTGGAAAACATGAGTATTCAGCCAGTCAAAAGGAGCTGA |
NT05SP0005 |
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|
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|
TIGR:NT05SP0005 |
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| NT05SP0055_rep1 |
5968 |
5 |
3 |
8 |
10 |
CACCGCTTTCGGGAAATTGAAACCTTTGTGAAACTATGCAAAAAATCACTCAAACAGCCATCGCAAGCTG |
NT05SP0055 |
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TIGR:NT05SP0055 |
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| NT05SP0055_rep2 |
6130 |
5 |
3 |
17 |
10 |
CACCGCTTTCGGGAAATTGAAACCTTTGTGAAACTATGCAAAAAATCACTCAAACAGCCATCGCAAGCTG |
NT05SP0055 |
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|
|
|
TIGR:NT05SP0055 |
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| NT05SP0065_rep1 |
7609 |
6 |
4 |
9 |
13 |
TAAAAAAGCTATCATCACACTTACAGCTGATTCTAAAGCAATCGAGTTGTTTGCTGCTGAAGCTGAATAA |
NT05SP0065 |
|
|
|
|
TIGR:NT05SP0065 |
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| NT05SP0065_rep2 |
7771 |
6 |
4 |
18 |
13 |
TAAAAAAGCTATCATCACACTTACAGCTGATTCTAAAGCAATCGAGTTGTTTGCTGCTGAAGCTGAATAA |
NT05SP0065 |
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TIGR:NT05SP0065 |
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| NT05SP0142_rep1 |
6961 |
6 |
2 |
9 |
13 |
CTTTGAGCAACCTACGGCTAGCTTCCTAGTTTGCTCTTTGATTCTCATTGAGTATCAGTATAGGTTATAA |
NT05SP0142 |
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TIGR:NT05SP0142 |
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| NT05SP0142_rep2 |
7123 |
6 |
2 |
18 |
13 |
CTTTGAGCAACCTACGGCTAGCTTCCTAGTTTGCTCTTTGATTCTCATTGAGTATCAGTATAGGTTATAA |
NT05SP0142 |
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TIGR:NT05SP0142 |
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| NT05SP0154_rep1 |
7590 |
6 |
4 |
8 |
12 |
TTATGTCAATACTTCTAATGTAGTCCCTATGGCCGTCGGTGAATTTGCCTTACAGTCTCTAAAACAATAA |
NT05SP0154 |
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|
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|
TIGR:NT05SP0154 |
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| NT05SP0154_rep2 |
7752 |
6 |
4 |
17 |
12 |
TTATGTCAATACTTCTAATGTAGTCCCTATGGCCGTCGGTGAATTTGCCTTACAGTCTCTAAAACAATAA |
NT05SP0154 |
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|
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|
TIGR:NT05SP0154 |
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| NT05SP0169_rep1 |
5320 |
5 |
1 |
8 |
10 |
AAAAGGTGTGGTCATCTATGTAGAAAAGGAAAGTGTAATGGGAAAGACAAAAGAACTGCTTTTTAAGTAG |
NT05SP0169 |
|
|
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|
TIGR:NT05SP0169 |
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| NT05SP0169_rep2 |
5482 |
5 |
1 |
17 |
10 |
AAAAGGTGTGGTCATCTATGTAGAAAAGGAAAGTGTAATGGGAAAGACAAAAGAACTGCTTTTTAAGTAG |
NT05SP0169 |
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|
TIGR:NT05SP0169 |
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| NT05SP0181_rep1 |
6942 |
6 |
2 |
8 |
12 |
TGTAGATAAGGAGAAGCTGATGTGGTTTGAAGAGGTTTTCGAAGAGTGTAAAAAAATATTGGTCAGTTAA |
NT05SP0181 |
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TIGR:NT05SP0181 |
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| NT05SP0181_rep2 |
7104 |
6 |
2 |
17 |
12 |
TGTAGATAAGGAGAAGCTGATGTGGTTTGAAGAGGTTTTCGAAGAGTGTAAAAAAATATTGGTCAGTTAA |
NT05SP0181 |
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TIGR:NT05SP0181 |
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| NT05SP0194_rep1 |
4605 |
4 |
3 |
4 |
15 |
CGGCCGTAGTAAAATAACCGATTTTGACGATGTTGTAAAATTAGATGTGGCTTATATTGATAATTGGACA |
NT05SP0194 |
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|
|
|
TIGR:NT05SP0194 |
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| NT05SP0194_rep2 |
4767 |
4 |
3 |
13 |
15 |
CGGCCGTAGTAAAATAACCGATTTTGACGATGTTGTAAAATTAGATGTGGCTTATATTGATAATTGGACA |
NT05SP0194 |
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TIGR:NT05SP0194 |
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| NT05SP0195_rep1 |
5337 |
5 |
1 |
9 |
9 |
TCCGTGTAGCTAATGAGCCTAAACGTCTCTTTAAACGTTATTTTGTAGGGAATATTTCATTCATAGGAAAAG |
NT05SP0195 |
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TIGR:NT05SP0195 |
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| NT05SP0195_rep2 |
5499 |
5 |
1 |
18 |
9 |
TCCGTGTAGCTAATGAGCCTAAACGTCTCTTTAAACGTTATTTTGTAGGGAATATTTCATTCATAGGAAAAG |
NT05SP0195 |
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TIGR:NT05SP0195 |
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Total number of rows: 6922
Table truncated, full table size 2078 Kbytes.
| Supplementary data files not provided |
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