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Platform GPL6313 Query DataSets for GPL6313
Status Public on Jan 20, 2008
Title Print_951
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
Manufacturer Stanford Functional Genomics Facility, Stanford School of Medicine
Manufacture protocol Material is transferred from microtiter plate wells to the slide surface by an automated print head
Support glass
 
Description SHEK
 
Submission date Dec 20, 2007
Last update date Jan 20, 2008
Contact name Jonathan Pollack
E-mail(s) [email protected]
Phone 650-736-1987
Organization name Stanford University
Department Pathology
Lab Pollack Lab
Street address 269 Campus Drive, CCSR3245A
City Stanford
State/province CA
ZIP/Postal code 94305-5176
Country USA
 
Samples (20) GSM252636, GSM252639, GSM287472, GSM287473, GSM287474, GSM287475 
Series (3)
GSE9994 Genomic profiling identifies TITF1 as a lineage-specific oncogene amplified in lung cancer: Expression Arrays
GSE9995 Genomic profiling identifies TITF1 as a lineage-specific oncogene amplified in lung cancer
GSE11376 Candidate prostate cancer genes through comparative expression-profiling of seminal vesicle

Data table header descriptions
ID
MetaColumn
MetaRow
Column
Row
SPOT_ID
Reporter Species
GB_LIST GenBank Accession number
CLONE_ID
Reporter BioSequence Database Entry [preferredName]
Repoter Biosequence Type
Repoter BioSequence PolymerType
Reporter Group[role]
Reporter ControlType
CompositeSequence Identifier
CompositeSequence Name
embl
geneName
geneSymbol
locus
unigene
CompositeSequence Biosequence Type
CompositeSequence BioSequence PolymerType
Plate Identifier
Plate Row
Plate Column
LUID
Failed
Contaminated
Sequence Verified
Plate Source

Data table
ID MetaColumn MetaRow Column Row SPOT_ID Reporter Species GB_LIST CLONE_ID Reporter BioSequence Database Entry [preferredName] Repoter Biosequence Type Repoter BioSequence PolymerType Reporter Group[role] Reporter ControlType CompositeSequence Identifier CompositeSequence Name embl geneName geneSymbol locus unigene CompositeSequence Biosequence Type CompositeSequence BioSequence PolymerType Plate Identifier Plate Row Plate Column LUID Failed Contaminated Sequence Verified Plate Source
1 1 1 1 1 IMAGE:342721 Homo sapiens W68291,W68403 IMAGE:342721 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:ITGB2 ITGB2 Integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) ITGB2 3689 Hs.375957 gene DNA SHEK_1 D 1 500301 0 U U rgsv;[(384:gf200sv1prt2362_Dd1),(96:gf200sv4b1)]
31 1 1 1 2 IMAGE:1636606 Homo sapiens AI000188 IMAGE:1636606 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:UGT2B7 UGT2B7 UDP glucuronosyltransferase 2 family, polypeptide B7 UGT2B7 7364 Hs.631944 gene DNA SHEK_4 P 1 521109 0 U U rgsv;[(384:gf201sv97prt2258_Cp1),(96:gf204sv220h1)]
61 1 1 1 3 IMAGE:470393 Homo sapiens AA031513,AA031514 IMAGE:470393 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:MMP7 MMP7 Matrix metallopeptidase 7 (matrilysin, uterine) MMP7 4316 Hs.2256 gene DNA SHEK_8 L 1 500253 0 U U rgsv;[(384:gf208sv441prt2262_Cl1),(96:gf200sv3f1)]
91 1 1 1 4 IMAGE:295843 Homo sapiens N66957 IMAGE:295843 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:CYP27A1 CYP27A1 Cytochrome P450, family 27, subfamily A, polypeptide 1 CYP27A1 1593 Hs.516700 gene DNA SHEK_12 H 1 509157 2 U U rgsv;[(384:gf201sv93prt2266_Ch1),(96:gf201sv96d1)]
121 1 1 1 5 IMAGE:109221 Homo sapiens T81400,T81399 IMAGE:109221 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:KIAA0286 KIAA0286 KIAA0286 protein KIAA0286 23306 Hs.591040 gene DNA SHEK_16 D 1 500877 0 U U rgsv;[(384:gf208sv444prt2270_Cd1),(96:gf200sv10b1)]
151 1 1 1 6 IMAGE:1455394 Homo sapiens AA865265 IMAGE:1455394 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:CYCS CYCS Cytochrome c, somatic CYCS 54205 Hs.437060 gene DNA SHEK_19 P 1 516885 0 U U rgsv;[(384:gf208sv437prt2273_Cp1),(96:gf203sv176h1)]
181 1 1 1 7 IMAGE:379376 Homo sapiens AA705631 IMAGE:379376 cDNA_clone DNA Experimental SHEK_23 L 1 528765 0 U U rgsv;[(384:gf201sv57prt2277_Cl1),(96:gf205sv300f1)]
211 1 1 1 8 IMAGE:261745 Homo sapiens H99152,N24401 IMAGE:261745 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneName:CDNA FLJ13267 fis, clone OVARC1000964 CDNA FLJ13267 fis, clone OVARC1000964 CDNA FLJ13267 fis, clone OVARC1000964 Hs.57079 gene DNA SHEK_27 H 1 510981 0 U U rgsv;[(384:gf200sv54prt2281_Ch1),(96:gf202sv115d1)]
241 1 1 1 9 IMAGE:265625 Homo sapiens N22827,N28633 IMAGE:265625 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:FDX1 FDX1 Ferredoxin 1 FDX1 2230 Hs.744 gene DNA SHEK_31 D 1 506253 2 U U rgsv;[(384:gf200sv34prt2285_Cd1),(96:gf201sv66b1)]
271 1 1 1 10 IMAGE:277346 Homo sapiens N47633,N57487 IMAGE:277346 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:C1GALT1 C1GALT1 Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 C1GALT1 56913 Hs.592180 gene DNA SHEK_34 P 1 518901 0 U U rgsv;[(384:gf202sv114prt2288_Cp1),(96:gf203sv197h1)]
301 1 1 1 11 IMAGE:289055 Homo sapiens N76365,N59835 IMAGE:289055 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:ANKS1B ANKS1B Ankyrin repeat and sterile alpha motif domain containing 1B ANKS1B 56899 Hs.506458 gene DNA SHEK_38 L 1 507741 0 U U rgsv;[(384:gf203sv216prt2292_Cl1),(96:gf201sv81f1)]
331 1 1 1 12 IMAGE:241794 Homo sapiens H90573,H90572 IMAGE:241794 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:AHDC1 AHDC1 AT hook, DNA binding motif, containing 1 AHDC1 27245 Hs.469280 gene DNA SHEK_42 H 1 505029 0 U U rgsv;[(384:gf203sv215prt2296_Ch1),(96:gf200sv53d1)]
361 1 1 1 13 IMAGE:49336 Homo sapiens H15473,H15418 IMAGE:49336 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:CA10 CA10 Carbonic anhydrase X CA10 56934 Hs.463466 gene DNA SHEK_46 D 1 523341 0 U U rgsv;[(384:gf203sv165prt2300_Cd1),(96:gf204sv244b1)]
391 1 1 1 14 IMAGE:415682 Homo sapiens W78857,W84711 IMAGE:415682 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:FN1 FN1 Fibronectin 1 FN1 2335 Hs.203717 gene DNA SHEK_49 P 1 507093 0 U U rgsv;[(384:gf204sv238prt2303_Cp1),(96:gf201sv74h1)]
421 1 1 1 15 IMAGE:842838 Homo sapiens AA486276,AA489299 IMAGE:842838 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:TADA3L TADA3L Transcriptional adaptor 3 (NGG1 homolog, yeast)-like TADA3L 10474 Hs.386390 gene DNA SHEK_53 L 1 512733 0 U U rgsv;[(384:gf205sv307prt2307_Cl1),(96:gf202sv133f1)]
451 1 1 1 16 IMAGE:362686 Homo sapiens AA018618,AA018617 IMAGE:362686 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:KIAA1529 KIAA1529 KIAA1529 KIAA1529 57653 Hs.435629 gene DNA SHEK_57 H 1 518277 2 U U rgsv;[(384:gf203sv163prt2311_Ch1),(96:gf203sv191d1)]
481 1 1 1 17 IMAGE:366484 Homo sapiens AA026490,AA026413 IMAGE:366484 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:GTPBP1 GTPBP1 GTP binding protein 1 GTPBP1 9567 Hs.276925 gene DNA SHEK_61 D 1 506829 0 U U rgsv;[(384:gf205sv305prt2315_Cd1),(96:gf201sv72b1)]
511 1 1 1 18 IMAGE:1574642 Homo sapiens AA968971 IMAGE:1574642 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:FLJ41603 FLJ41603 FLJ41603 protein FLJ41603 389337 Hs.256206 gene DNA SHEK_64 P 1 526581 0 U U rgsv;[(384:gf204sv251prt2318_Cp1),(96:gf205sv277h1)]
541 1 1 1 19 IMAGE:447616 Homo sapiens AA702135 IMAGE:447616 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:C20orf196 C20orf196 Hypothetical protein FLJ25067 C20orf196 149840 Hs.529340 gene DNA SHEK_68 L 1 522525 0 U U rgsv;[(384:gf202sv147prt2322_Cl1),(96:gf204sv235f1)]
571 1 1 1 20 IMAGE:121580 Homo sapiens T97921,T97920 IMAGE:121580 cDNA_clone DNA Experimental URN:LSID:smd.stanford.edu:GeneSymbol:IGFBP7 IGFBP7 Insulin-like growth factor binding protein 7 IGFBP7 3490 Hs.479808 gene DNA SHEK_72 H 1 513957 0 U U rgsv;[(384:gf203sv172prt2326_Ch1),(96:gf202sv146d1)]

Total number of rows: 41472

Table truncated, full table size 12097 Kbytes.




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