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Status
Public on Dec 03, 2008
Title
Agilent-019119 Mouse miRNA Microarray 1.0 G4472A
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Mus musculus
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G4472A
Description
Agilent Mouse miRNA Microarray 8x15K (G4472A) annotated against the Sanger miRBASE 12.0 database of miRNAs. The microarray is designed to contain probes specific for each of the mouse miRNAs in Sanger miRBASE 10.1, as well as probes specific to the mouse viral miRNAs in this database. Arrays of this design have barcodes that begin with 16019119 or 2519119. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Dec 03, 2008
Last update date
Dec 03, 2008
Organization
Agilent Technologies
E-mail(s)
[email protected]
Phone
877-424-4536
URL
http://www.agilent.com
Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (138)
GSM426418 , GSM426419 , GSM426420 , GSM426421 , GSM426422 , GSM426423
GSM426424 ,
GSM426425 ,
GSM450156 ,
GSM450157 ,
GSM466088 ,
GSM466089 ,
GSM466090 ,
GSM466091 ,
GSM466092 ,
GSM466093 ,
GSM466094 ,
GSM466095 ,
GSM466096 ,
GSM466097 ,
GSM466098 ,
GSM466099 ,
GSM466100 ,
GSM466101 ,
GSM466102 ,
GSM466103 ,
GSM466104 ,
GSM466105 ,
GSM466106 ,
GSM466107 ,
GSM466108 ,
GSM466109 ,
GSM466110 ,
GSM466111 ,
GSM466112 ,
GSM466113 ,
GSM466114 ,
GSM466115 ,
GSM466116 ,
GSM466117 ,
GSM466118 ,
GSM466119 ,
GSM466120 ,
GSM466121 ,
GSM466122 ,
GSM466123 ,
GSM466124 ,
GSM466125 ,
GSM466126 ,
GSM466127 ,
GSM466128 ,
GSM466129 ,
GSM483274 ,
GSM483275 ,
GSM483276 ,
GSM484441 ,
GSM484442 ,
GSM484443 ,
GSM484444 ,
GSM484445 ,
GSM484446 ,
GSM484447 ,
GSM822522 ,
GSM822523 ,
GSM822524 ,
GSM822525 ,
GSM822526 ,
GSM822527 ,
GSM822528 ,
GSM822529 ,
GSM1027915 ,
GSM1027916 ,
GSM1027917 ,
GSM1027918 ,
GSM1027919 ,
GSM1027920 ,
GSM1027921 ,
GSM1027922 ,
GSM1063556 ,
GSM1063557 ,
GSM1063558 ,
GSM1063559 ,
GSM1063560 ,
GSM1063561 ,
GSM1063562 ,
GSM1063563 ,
GSM1063564 ,
GSM1063565 ,
GSM1063566 ,
GSM1063567 ,
GSM1065315 ,
GSM1065316 ,
GSM1065317 ,
GSM1065318 ,
GSM1065319 ,
GSM1065320 ,
GSM1065321 ,
GSM1065322 ,
GSM1194895 ,
GSM1194896 ,
GSM1194897 ,
GSM1194898 ,
GSM1194899 ,
GSM1194900 ,
GSM1194901 ,
GSM1194902 ,
GSM1194903 ,
GSM1194904 ,
GSM1194905 ,
GSM1194906 ,
GSM1194907 ,
GSM1194908 ,
GSM1194909 ,
GSM1194910 ,
GSM1599866 ,
GSM1599867 ,
GSM1599868 ,
GSM1599869 ,
GSM1599870 ,
GSM1599871 ,
GSM1969020 ,
GSM1969021 ,
GSM1969022 ,
GSM1969023 ,
GSM1969024 ,
GSM1969025 ,
GSM2227336 ,
GSM2227337 ,
GSM2227338 ,
GSM2227339 ,
GSM2227340 ,
GSM2227341 ,
GSM2227342 ,
GSM2227343 ,
GSM2227344 ,
GSM2227345 ,
GSM2227346 ,
GSM2227347
Series (19)
GSE17035
microRNA microarray profiling in the livers of control db/+ and diabetic db/db mice
GSE17977
miRNA profiles of adipocyte-derived microvesicles (ADMs)
GSE18786
MicroRNA expression profiling in adult mouse liver following benzo(a)pyrene (BaP) treatment [Agilent miRNA array]
GSE18841
Adult mouse liver following benzo(a)pyrene (BaP) treatment: miRNA and mRNa profiling
GSE19427
miRNA profiling by Agilent mouse miRNA microarray
GSE19438
Reference: MicroRNA expression profiling in adult mouse liver following BaP treatment [Agilent miRNA array]
GSE19808
miRNA profiling of miRNAs in Hibernating Arctic Ground Squirrels
GSE32937
MicroRNA-29 in Aortic Dilation: Implications for Aneurysm Formation
GSE41306
Expression Profiles of miRNAs in brown fat of mice at room temperature and cold exposure (8C)
GSE43483
MetSearch: A screening platform for the discovery of genes implicated in metastatic dormancy and reactivation
GSE43556
MicroRNA-34a regulates cardiac ageing and function
GSE49167
miR expression profiling of mouse hematopoietic stem and progenitor populations [miRNA]
GSE49170
miR expression profiling of mouse hematopoietic stem and progenitor populations
GSE65535
Lin28b promotes fetal B lymphopoiesis through the transcription factor Arid3a [miRNA]
GSE65536
Lin28b promotes fetal B lymphopoiesis through the transcription factor Arid3a
GSE75862
miRNA expression profile of mouse Lewis lung carcinoma LLC1 cell line cultivated in 2-dimensional or 3-dimensional cell culture enriched with laminin rich extracellular matrix proteins
GSE75864
Profile of mouse Lewis lung carcinoma LLC1 cell line cultivated in 2-dimensional or 3-dimensional cell culture enriched with laminin rich extracellular matrix proteins
GSE84109
miRNA expression profile of of mouse Lewis lung carcinoma cell line treated with single or fractionated ionizing radiation doses
GSE84111
Mouse Lewis lung carcinoma cell line treated with single or fractionated ionizing radiation doses nated ionizing radiation doses
Relations
Alternative to
GPL8824
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
miRNA_ID
PROBE NAME
Spot identifier
CONTROL_TYPE
Control type
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
DESCRIPTION
Description
SPOT_ID
Data table
ID
COL
ROW
miRNA_ID
PROBE NAME
CONTROL_TYPE
ACCESSION_STRING
CHROMOSOMAL_LOCATION
DESCRIPTION
SPOT_ID
1
96
164
miRNABrightCorner30
pos
CONTROL
2
96
162
DarkCorner
pos
CONTROL
3
96
160
NA
ignore
-- ignore
4
96
158
NA
ignore
-- ignore
5
96
156
mghv-miR-M1-7-3p
A_54_P2238
FALSE
mir|mghv-miR-M1-7-3p|mir|MIMAT0001571
unmapped
NA
6
96
154
mmu-miR-471
A_54_P2781
FALSE
mir|mmu-miR-471|mir|MIMAT0002112
chrX:064045797-064045776
NA
7
96
152
mmu-miR-671-3p
A_54_P2870
FALSE
mir|mmu-miR-671-3p|mir|MIMAT0004821
chr5:024098000-024098009
NA
8
96
150
mmu-miR-384-3p
A_54_P2698
FALSE
mir|mmu-miR-384-3p|mir|MIMAT0001076
chrX:102539698-102539680
NA
9
96
148
mmu-miR-197
A_54_P3063
FALSE
mir|mmu-miR-197|mir|MIMAT0004860
unmapped
NA
10
96
146
mmu-miR-27a*
A_54_P3469
FALSE
mir|mmu-miR-27a*|mir|MIMAT0004633
chr8:086732592-086732605
NA
11
96
144
mmu-miR-678
A_54_P1917
FALSE
mir|mmu-miR-678|mir|MIMAT0003452
chr10:075670147-075670136
NA
12
96
142
mmu-miR-96
A_54_P1331
FALSE
mir|mmu-miR-96|mir|MIMAT0000541
chr6:030119491-030119471
NA
13
96
140
mmu-miR-297b-5p
A_54_P2928
FALSE
mir|mmu-miR-297b-5p|mir|MIMAT0003480
chr2:010433317-010433334
NA
14
96
138
mmu-miR-26b
A_54_P2484
FALSE
mir|mmu-miR-26b|mir|MIMAT0000534
chr1:074440899-074440918
NA
15
96
136
mmu-miR-709
A_54_P2098
FALSE
mir|mmu-miR-709|mir|MIMAT0003499
chr8:086610074-086610084
NA
16
96
134
mmu-miR-693-3p
A_54_P1998
FALSE
mir|mmu-miR-693-3p|mir|MIMAT0004189
chr17:046368538-046368552
NA
17
96
132
mmu-miR-196b
A_54_P2703
FALSE
mir|mmu-miR-196b|mir|MIMAT0001081
chr6:052180116-052180098
NA
18
96
130
NA
ignore
-- ignore
19
96
128
mmu-let-7e
A_54_P2469
FALSE
mir|mmu-let-7e|mir|MIMAT0000524
chr17:017967333-017967351
NA
20
96
126
mmu-miR-700
A_54_P2063
FALSE
mir|mmu-miR-700|mir|MIMAT0003490
chr4:134972542-134972529
NA
Total number of rows: 15744 Table truncated, full table size 1340 Kbytes .
Supplementary data files not provided