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Platform GPL9202 Query DataSets for GPL9202
Status Public on Oct 05, 2009
Title Agilent/FIMM Human 95K Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol See manufacturer's web site at http://www.agilent.com/
 
Description Agilent-013681
 
Submission date Sep 16, 2009
Last update date Oct 05, 2009
Contact name Maija K Wolf
E-mail(s) [email protected]
Organization name Institute for Molecular Medicine Finland (FIMM)
Street address Biomedicum Helsinki 2U, Tukholmankatu 8,
City Helsinki
ZIP/Postal code FIN-00290
Country Finland
 
Samples (2) GSM453632, GSM453633
Series (2)
GSE18143 aCGH of neuroblastic tumors
GSE18144 Array-based gene expression, CGH and tissue data define a 12q24 gain in neuroblastic tumors with prognostic implication

Data table header descriptions
ID Agilent feature number
Row
Col
GB_LIST GenBank or RefSeq accession
SPOT_ID Spot identifier
Accessions
SEQUENCE Sequence of probe
ProbeUID
ControlType
ProbeName
GeneName
SystematicName
Description

Data table
ID Row Col GB_LIST SPOT_ID Accessions SEQUENCE ProbeUID ControlType ProbeName GeneName SystematicName Description
1 1 1 --HsCGHBrightCorner 0 1 HsCGHBrightCorner HsCGHBrightCorner HsCGHBrightCorner
2 1 2 --NegativeControl 1 -1 (-)3xSLv1 NegativeControl NegativeControl
3 1 3 A_14_P115839 GTTGGAATATTAAAACAGTATAGCAGTGGCACTGGAAAGGCACACTGATTATCATCATTT 2 0 A_14_P115839 chr3:018780643-018780702 chr3:018780643-018780702 Unknown
4 1 4 NM_004646 ref|NM_004646|gb|AF035835 CATTTCATTTTTGAGACGACGTTTACAATCTGCCCTGTCCTTTTGGAGAAGTTTAGTT 4 0 A_14_P138950 NPHS1 chr19:041008990-041009047 Homo sapiens nephrosis 1, congenital, Finnish type (nephrin) (NPHS1), mRNA [NM_004646]
5 1 5 NM_017859 ref|NM_017859|gb|AK000524 ACACAGCAAGGACAGAGGAACAGCAAACAAGGACAAGGGAAGGAG 6 0 A_16_P03549975 UCKL1 chr20:062048974-062049018 Homo sapiens uridine-cytidine kinase 1-like 1 (UCKL1), mRNA [NM_017859]
6 1 6 NM_015047 ref|NM_015047|gb|BX648708 ACCCATTAAATGAAAAAAAGCAAATTTCATAAGAATAAATATAGGTCAATTGCATGTGAA 8 0 A_16_P00024200 KIAA0090 chr1:019300490-019300549 Homo sapiens KIAA0090 protein (KIAA0090), mRNA [NM_015047]
7 1 7 NM_018962 ref|NM_018962|gb|AB037158 TACTGCCACTCTGAATTTGATGCTCTCCTCTGCCAAAATAGTCTTAGAATTGCAAAC 10 0 A_16_P03584307 DSCR6 chr21:037307276-037307332 Homo sapiens Down syndrome critical region gene 6 (DSCR6), mRNA [NM_018962]
8 1 8 A_14_P138260 AAGTTTGACCAACAGGATGTGAATAAAATCCAATCCTAAATCTCTGACTGTTTCACATCA 12 0 A_14_P138260 chr3:036246365-036246424 chr3:036246365-036246424 Unknown
9 1 9 A_14_P131265 AGTTCAATTCCAATCATGACTCATTGGCTTAGCCATCAAAGTTTATCTTTCCTTTTGAAC 14 0 A_14_P131265 chr3:118756165-118756224 chr3:118756165-118756224 Unknown
10 1 10 NM_004504 ref|NM_004504|gb|BC030592 TGAAATCTATCTCCATGACAACATTCACACAACAGGAAATTGAATTCTTACAAAAACATG 16 0 A_14_P135304 HRB chr2:228181794-228181853 Homo sapiens HIV-1 Rev binding protein (HRB), mRNA [NM_004504]
11 1 11 A_16_P02079559 ACAGGTGCAATGAAGTCATAATTATTCTTAAACTAATATTTTGACTATTCCATGTCTGGA 18 0 A_16_P02079559 chr9:024277463-024277522 chr9:024277463-024277522 Unknown
12 1 12 NM_003982 ref|NM_003982|gb|BX248291 TATAAAAAGAAATTATGGAGGCAAATTGTGAAATTTAACATCTTCAGAGAATAAGATAGG 20 0 A_16_P02874260 SLC7A7 chr14:022316369-022316428 Homo sapiens solute carrier family 7 (cationic amino acid transporter, y+ system), member 7 (SLC7A7), mRNA [NM_003982]
13 1 13 NM_173653 ref|NM_173653|gb|BC035779 GCACTAACATATAACATAGTTCACATACCTGAAAACATCATCATGTGCTGAAAGTTCCAG 22 0 A_14_P135194 SLC9A9 chr3:144695165-144695224 Homo sapiens solute carrier family 9 (sodium/hydrogen exchanger), isoform 9 (SLC9A9), mRNA [NM_173653]
14 1 14 NM_000034 ref|NM_000034|gb|BC062756 GGATTGTTACTAAGTGAACTAAGTGAAAATATTTTAATTTAATTGTAACTAAGTATTTGA 24 0 A_16_P03134367 ALDOA chr16:029986803-029986862 Homo sapiens aldolase A, fructose-bisphosphate (ALDOA), transcript variant 1, mRNA [NM_000034]
15 1 15 NM_032030 ref|NM_032030|gb|AF352327 CTCCATGTATGAGAACAGCCTAATCCTGGAGAACATTACTAGTTTTGTTTCATCTTCCTA 26 0 A_14_P111497 FKSG83 chr6:027401385-027401444 Homo sapiens FKSG83 (FKSG83), mRNA [NM_032030]
16 1 16 NM_020137 ref|NM_020137|gb|AB032993 TGCCATGGAAGCACTGCTCACTTCCAGGTGCTTCACCTGCAAGAT 28 0 A_16_P03702938 GRIPAP1 chrX:048588736-048588780 Homo sapiens GRIP1 associated protein 1 (GRIPAP1), transcript variant 1, mRNA [NM_020137]
17 1 17 A_14_P105275 ATTAATTTTACGTTTGTGCGATATACAAATAAGTGAGAGCCCTTCAGTGTTCAGTGCTCA 30 0 A_14_P105275 chr4:112074591-112074650 chr4:112074591-112074650 Unknown
18 1 18 NM_001427 ref|NM_001427|ens|ENST00000297375 GAGGGTGAACTTCGCTCTTTGCCTTAAACCTCTTTATTTCATTGCAGTAATAGTTTTACG 32 0 A_14_P128961 EN2 chr7:154756593-154756652 Homo sapiens engrailed homolog 2 (EN2), mRNA [NM_001427]
19 1 19 NM_032866 ref|NM_032866|gb|AY274808 CCAGGAATACACGCATCTGCACAAATATATGAATGTCTAGCACAAAAGATTTGCAAATCA 34 0 A_16_P03037034 CGNL1 chr15:055607783-055607842 Homo sapiens cingulin-like 1 (CGNL1), mRNA [NM_032866]
20 1 20 NM_000158 ref|NM_000158|gb|L07956 AATCCATCAAAGCGATATTCTTCCAACCACCATCTTATGTTTGACAGAAGGAATCTTAAA 36 0 A_14_P108066 GBE1 chr3:081725796-081725855 Homo sapiens glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen disease, glycogen storage disease type IV) (GBE1), mRNA [NM_000158]

Total number of rows: 94790

Table truncated, full table size 21659 Kbytes.




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