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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 01, 2009 |
| Title |
NimbleGen Human 2.1M array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
see manufacturer's web site www.nimblegen.com
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| Description |
Annotation based on UCSC human genome assembly March 2006 (HG18)
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| Submission date |
Sep 23, 2009 |
| Last update date |
Nov 01, 2009 |
| Contact name |
Akiko Doi |
| E-mail(s) |
[email protected]
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| Phone |
410-614-3478
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| Organization name |
Johns Hopkins University School of Medicine
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| Department |
Medicine
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| Street address |
855 N Wolfe St, Rangos 580
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| City |
Baltimore |
| State/province |
MD |
| ZIP/Postal code |
21205 |
| Country |
USA |
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| Samples (179)
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GSM455529, GSM455530, GSM455531, GSM455532, GSM455533, GSM455534
GSM455535, GSM455536, GSM455537, GSM455538, GSM455539, GSM455540, GSM587826, GSM587827, GSM587828, GSM587829, GSM587830, GSM587831, GSM587832, GSM587833, GSM587834, GSM587835, GSM587836, GSM587837, GSM587838, GSM587839, GSM587840, GSM587841, GSM587842, GSM587843, GSM587844, GSM587845, GSM587846, GSM587847, GSM587848, GSM587849, GSM587850, GSM592138, GSM592139, GSM592140, GSM592141, GSM592142, GSM592143, GSM592144, GSM592145, GSM592146, GSM592147, GSM592148, GSM592149, GSM592150, GSM592151, GSM592152, GSM592153, GSM592154, GSM592155, GSM592156, GSM592157, GSM592158, GSM592159, GSM592160, GSM592161, GSM592162, GSM592163, GSM592164, GSM592165, GSM592166, GSM592167, GSM592168, GSM592169, GSM592170, GSM592171, GSM592172, GSM592173, GSM592174, GSM592175, GSM592176, GSM592177, GSM592178, GSM592179, GSM592180, GSM592181, GSM592182, GSM592183, GSM592184, GSM592185, GSM592186, GSM592187, GSM592188, GSM592189, GSM592190, GSM592191, GSM592192, GSM592193, GSM592194, GSM592195, GSM592196, GSM592197, GSM592198, GSM592199, GSM592200, GSM592201, GSM592202, GSM592203, GSM592204, GSM592205, GSM592206, GSM592207, GSM592208, GSM592291, GSM592292, GSM592293, GSM592294, GSM592295, GSM592296, GSM592297, GSM592298, GSM592299, GSM592300, GSM592301, GSM592302, GSM592303, GSM592304, GSM592305, GSM592306, GSM592307, GSM592308, GSM592309, GSM592310, GSM592311, GSM592312, GSM592313, GSM592314, GSM592315, GSM592316, GSM592317, GSM592318, GSM592319, GSM592320, GSM592321, GSM592322, GSM592323, GSM592324, GSM592325, GSM592326, GSM592327, GSM592328, GSM592329, GSM592330, GSM592331, GSM610948, GSM610949, GSM610950, GSM610951, GSM610952, GSM610953, GSM610954, GSM610955, GSM805298, GSM805299, GSM805300, GSM805301, GSM805376, GSM805377, GSM805378, GSM805379, GSM805380, GSM805381, GSM805514, GSM805515, GSM805516, GSM805517, GSM805518, GSM805538, GSM805607, GSM805639, GSM805640, GSM805641, GSM805642, GSM805643
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| Series (6)
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| GSE18111 |
Human iPS cells and fibroblasts |
| GSE18227 |
DNA methylation data from human iPS cells and fibroblasts |
| GSE23841 |
DNA methylation data from human liver, frontal cortex, spleen and colon |
| GSE23858 |
DNA methylation data from non-immortalized lymphocyte samples from participants of the AGES Reykjavik Study |
| GSE24820 |
DNA methylation data from a separate set of human iPS cells and fibroblasts, and ES cells |
| GSE32528 |
DNA methylation profiles of human prefrontal cortex |
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| Data table header descriptions |
| ID |
PROBE_DESIGN_ID in the .ndf file |
| PROBE_ID |
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| SEQ_ID |
SEQ_ID in the .ndf file |
| SEQUENCE |
Sequence of the probe |
| CHROMOSOME |
Chromosomal location |
| RANGE_GB |
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| RANGE_START |
Chromosomal start position of oligo |
| RANGE_END |
Chromosomal end position of oligo |
| Data table |
| ID |
PROBE_ID |
SEQ_ID |
SEQUENCE |
CHROMOSOME |
RANGE_GB |
RANGE_START |
RANGE_END |
| 6351_27_3187 |
CHR01FS000794764 |
chr1:794622-796385 |
TTTCTACCTTTCGCCATCAAGAGCTTCAACACCTGGACACATTCCGCAAA |
chr1 |
NC_000001.9 |
794764 |
794813 |
| 6351_404_3136 |
CHR01FS000795052 |
chr1:794622-796385 |
GTAAGGCACTCGCGCTGCTGGGCCACGCCCACTCCCCCACGCGGGGAAGG |
chr1 |
NC_000001.9 |
795052 |
795101 |
| 6351_430_3552 |
CHR01FS000795196 |
chr1:794622-796385 |
CCTGGCGGCGCCTGTGCAGCGGCCAGTGCACCTGCTCCTGCCCTCGCCTC |
chr1 |
NC_000001.9 |
795196 |
795245 |
| 6351_143_3871 |
CHR01FS000795232 |
chr1:794622-796385 |
CCTGCCCTCGCCTCGGTCTCTGCCAGGACCCCGACGCCCAGCCGGACCCT |
chr1 |
NC_000001.9 |
795232 |
795281 |
| 6351_819_3945 |
CHR01FS000795274 |
chr1:794622-796385 |
CGGACCCTGCCCTCCAGCGGGGCCGCGGCTCCACGGCCCGCAACAGCAGC |
chr1 |
NC_000001.9 |
795274 |
795323 |
| 6351_547_3057 |
CHR01FS000795310 |
chr1:794622-796385 |
CCCGCAACAGCAGCCCCACCCGGCATTCGGCGCGCTCCGCGGGGCAGAGG |
chr1 |
NC_000001.9 |
795310 |
795359 |
| 6351_701_3873 |
CHR01FS000795376 |
chr1:794622-796385 |
CTGTGGCGCCGGCCTACAACCCCCACGCCGGGCCCGGGCCCCGTGATTAT |
chr1 |
NC_000001.9 |
795376 |
795425 |
| 6351_656_4066 |
CHR01FS000795411 |
chr1:794622-796385 |
GGGCCCCGTGATTATATTTGGGCCCCGTGTGATTATATTTGACAGGTCTT |
chr1 |
NC_000001.9 |
795411 |
795460 |
| 6351_500_3992 |
CHR01FS000795453 |
chr1:794622-796385 |
CAGGTCTTAGTTGACGCGCTGTTCAGCGCTTTGAGTTCGGCTGAGTTTTG |
chr1 |
NC_000001.9 |
795453 |
795502 |
| 6351_55_2851 |
CHR01FS000795510 |
chr1:794622-796385 |
GAATTTTCTTCCACAGGGGATTGTCTTGGATTTTTCTATTTCTCCCTCAG |
chr1 |
NC_000001.9 |
795510 |
795559 |
| 6351_345_3357 |
CHR01FS000795543 |
chr1:794622-796385 |
TTCTATTTCTCCCTCAGTATCCACCTGGAAAACATTTCAATTAATTTATA |
chr1 |
NC_000001.9 |
795543 |
795592 |
| 6351_396_3366 |
CHR01FS000795582 |
chr1:794622-796385 |
ATTAATTTATATTCACTTAAACATTTCCGTGCAAAAACTGTGTACAAAAG |
chr1 |
NC_000001.9 |
795582 |
795631 |
| 6351_970_3084 |
CHR01FS000795627 |
chr1:794622-796385 |
AAAAGCCCCAAAGTATAATTTGCGCAGTTGAGCACATGTTCTGTTGTCCA |
chr1 |
NC_000001.9 |
795627 |
795676 |
| 6351_499_3319 |
CHR01FS000795717 |
chr1:794622-796385 |
TGTGGATTTTTGGGATATTCCCAGAAGCCCAGATGGCCACACTTTAACTT |
chr1 |
NC_000001.9 |
795717 |
795766 |
| 6351_245_3313 |
CHR01FS000795747 |
chr1:794622-796385 |
AGATGGCCACACTTTAACTTTGGAGGAATTAATTCTCAGAATATTGCACA |
chr1 |
NC_000001.9 |
795747 |
795796 |
| 6351_148_3468 |
CHR01FS000795816 |
chr1:794622-796385 |
GGAGCATATATTCCCAGCAAAAGCTCTGGTTTTTTGAAGTCTGTGTTGTG |
chr1 |
NC_000001.9 |
795816 |
795865 |
| 6351_1033_3319 |
CHR01FS000795849 |
chr1:794622-796385 |
TTGAAGTCTGTGTTGTGTGTTATTTCCAGGAGAATATGCAATGATGACAA |
chr1 |
NC_000001.9 |
795849 |
795898 |
| 6351_573_3409 |
CHR01FS000795885 |
chr1:794622-796385 |
TGCAATGATGACAATGTTATTAACTGATTCGAATATGAAATGCTGTTATG |
chr1 |
NC_000001.9 |
795885 |
795934 |
| 6351_20_3664 |
CHR01FS000795945 |
chr1:794622-796385 |
AATCTTTGTGTTACACATTATGCCTAACTATAAATCTTCGTGTTATACAT |
chr1 |
NC_000001.9 |
795945 |
795994 |
| 6351_255_3931 |
CHR01FS000796173 |
chr1:794622-796385 |
AATGTTTTCCAGATGGTTAGATTACTGTTATTAGTTCTGATTTCATTGTT |
chr1 |
NC_000001.9 |
796173 |
796222 |
Total number of rows: 2162406
Table truncated, full table size 298428 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL9275.ndf.gz |
137.2 Mb |
(ftp)(http) |
NDF |
| GPL9275.pos.gz |
16.8 Mb |
(ftp)(http) |
POS |
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