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Series GSE110408 Query DataSets for GSE110408
Status Public on Aug 09, 2018
Title FOXF1 inhibits pulmonary fibrosis by preventing CDH2-CDH11 cadherin switch in myofibroblasts
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Idiopathic pulmonary fibrosis (IPF) is characterized by aberrant accumulation of collagen-secreting myofibroblasts. Development of effective therapies is limited due to incomplete understanding of molecular mechanisms regulating myofibroblast expansion. FOXF1 transcription factor is expressed in resident lung fibroblasts, but its role in lung fibrosis remains unknown due to the lack of genetic mouse models. Through comprehensive analysis of human IPF genomics data, lung biopsies and transgenic mice with fibroblast-specific inactivation of FOXF1, the present study shows that FOXF1 inhibits pulmonary fibrosis. FOXF1 deletion increases myofibroblast invasion, collagen secretion, and promotes a switch from of N-cadherin (CDH2) to Cadherin-11 (CDH11), which is critical step in acquisition of pro-fibrotic phenotype. FOXF1 directly binds to Cdh2 and Cdh11 promoters and differentially regulates transcription of these genes. Re-expression of CDH2 or inhibition of CDH11 in FOXF1-deficient cells reduces myofibroblast invasion in vitro. FOXF1 inhibits pulmonary fibrosis by regulating a switch from CDH2 to CDH11 in lung myofibroblasts.
 
Overall design RNA from fibroblasts isolated from bleomycin-treated Foxf1fl/fl and myoFoxf1 KO mouse lungs
 
Contributor(s) Black M, Du Y, Xu Y, Kalinichenko VV, V Kalin T
Citation(s) 29642003
Submission date Feb 09, 2018
Last update date Mar 21, 2019
Contact name Yan Xu
E-mail(s) [email protected]
Organization name Cicinnati children's Hospital Medical Center
Department Pulmonary Biology
Street address 3333 Burnet Avenue
City Cincinnati
State/province Ohio
ZIP/Postal code 45229
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (2)
GSM2990883 KO: myoFoxf1 KO
GSM2990884 CON: bleomycin-treated Foxf1fl/fl
Relations
BioProject PRJNA433652
SRA SRP132579

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE110408_Foxf1-FB-LungFibrosis-RNA-seq_reads_and_FPKM.xlsx 3.1 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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