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GEO accession:
Series GSE131062
Query DataSets for GSE131062
Status
Public on Apr 08, 2020
Title
The histone deacetylase complex MiDAC regulates a neurodevelopmental gene expression to control neurite outgrowth
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
32297854
,
35820704
NIH grant(s)
Grant ID
Grant title
Affiliation
Name
R00 CA181506
Trithorax-related, MLL3 and MLL4 in enhancer-mediated cancer pathogenesis
ST. JUDE CHILDREN'S RESEARCH HOSPITAL
Hans-Martin Herz
Submission date
May 12, 2019
Last update date
Aug 02, 2022
Contact name
Hans-Martin Herz
E-mail(s)
[email protected]
Phone
901-595-2058
Organization name
St. Jude Children's Research Hospital
Street address
262 Danny Thomas Place
City
Memphis
State/province
TN
ZIP/Postal code
38105-3678
Country
USA
Platforms (2)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (42)
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More...
GSM3762871
WT_rep1
GSM3762872
WT_rep2
GSM3762873
Dnttip1KO1_D2A7_rep1
GSM3762874
Dnttip1KO1_D2A7_rep2
GSM3762875
Dnttip1KO2_D1E6_rep1
GSM3762876
Dnttip1KO2_D1E6_rep2
GSM3762877
Elmsan1KO1_E2E8_rep1
GSM3762878
Elmsan1KO1_E2E8_rep2
GSM3762879
Elmsan1KO2_E2G7_rep1
GSM3762880
Elmsan1KO2_E2G7_rep2
GSM3762881
WT_Input_PFA_rep1
GSM3762882
WT_Input_DCL_rep1
GSM3762883
WT_Input_DCL_rep2
GSM3762884
WT_Input_PFA_rep2
GSM3762885
Dnttip1KO2_D1E6_Input_PFA_rep1
GSM3762886
Dnttip1KO2_D1E6_Input_DCL_rep1
GSM3762887
Dnttip1KO2_D1E6_Input_DCL_rep2
GSM3762888
Dnttip1KO2_D1E6_Input_PFA_rep2
GSM3762889
Elmsan1KO1_E2E8_Input_DCL_rep1
GSM3762890
Elmsan1KO1_E2E8_Input_DCL_rep2
GSM3762891
WT_H3K4me1ChIP_PFA_rep2
GSM3762892
WT_Dnttip1ChIP_DCL_rep1
GSM3762893
Dnttip1KO2_D1E6_H3K4me1ChIP_PFA_rep2
GSM3762894
WT_Dnttip1ChIP_DCL_rep2
GSM3762895
Dnttip1KO2_D1E6_Dnttip1ChIP_DCL_rep1
GSM3762896
Dnttip1KO2_D1E6_Dnttip1ChIP_DCL_rep2
GSM3762897
Elmsan1KO1_E2E8_Dnttip1ChIP_DCL_rep1
GSM3762898
Elmsan1KO1_E2E8_Dnttip1ChIP_DCL_rep2
GSM3762899
Dnttip1KO2_D1E6_H3K4me1ChIP_PFA_rep1
GSM3762900
WT_H3K4me1ChIP_PFA_rep1
GSM3762901
Dnttip1KO2_D1E6_H3K27me3ChIP_PFA_rep2
GSM3762902
Dnttip1KO2_D1E6_H3K27me3ChIP_PFA_rep1
GSM3762903
WT_H3K27me3ChIP_PFA_rep2
GSM3762904
WT_H3K27me3ChIP_PFA_rep1
GSM3762905
Dnttip1KO2_D1E6_H3K27acChIP_PFA_rep2
GSM3762906
Dnttip1KO2_D1E6_H3K27acChIP_PFA_rep1
GSM3762907
WT_H3K27acChIP_PFA_rep2
GSM3762908
WT_H3K27acChIP_PFA_rep1
GSM3762909
Dnttip1KO2_D1E6_H3K4me3ChIP_PFA_rep2
GSM3762910
Dnttip1KO2_D1E6_H3K4me3ChIP_PFA_rep1
GSM3762911
WT_H3K4me3ChIP_PFA_rep2
GSM3762912
WT_H3K4me3ChIP_PFA_rep1
This SuperSeries is composed of the following SubSeries:
GSE131060
The histone deacetylase complex MiDAC regulates a neurodevelopmental gene expression to control neurite outgrowth [RNA-Seq]
GSE131061
The histone deacetylase complex MiDAC regulates a neurodevelopmental gene expression to control neurite outgrowth [ChIP-Seq]
Relations
BioProject
PRJNA542528
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE131062_RAW.tar
6.6 Gb
(http)
(custom)
TAR (of BW)
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