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Series GSE133684 Query DataSets for GSE133684
Status Public on Oct 01, 2019
Title Blood extracellular vesicle long RNA sequencing of human blood from pancreatic ductal adenocarcinoma (PDAC), chronic pancreatitis (CP) and healthy individuals
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary Blood samples were collected from all participants in 10-mL EDTA-coated Vacutainer tubes. Plasma was separated by centrifugation at 3,000 rpm for 10 min at room temperature (25°C) within 2 h after blood collection and then centrifuged at 13,000 rpm for 10 min at 4°C to remove debris. Isolated plasma samples were stored at -80°C until use. EV RNA were isolated by affinity-based binding to spin columns using an exoRNeasy Serum/Plasma kit (Qiagen, Hilden, Germany). RNA libraries were prepared for sequencing using SMARTer® Stranded Total RNA-Seq Kit - Pico Input Mammalian. RNA-seq was performed by the Illumina sequencing platform on a 150-bp paired-end run.
 
Overall design Blood extracellular vesicle long RNA profiles of human plasma by deep sequencing using Illumina Hiseq.
 
Contributor(s) Wang P, Huang S
Citation(s) 31562239
Submission date Jul 02, 2019
Last update date Aug 03, 2020
Contact name Shenglin Huang
Organization name Fudan University
Street address 270 Dongan
City Shanghai
ZIP/Postal code 200032
Country China
 
Platforms (1)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (401)
GSM3914463 PDAC_001
GSM3914464 PDAC_002
GSM3914465 PDAC_003
Relations
BioProject PRJNA552230
SRA SRP212755

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE133684_exp_TPM-all.txt.gz 36.8 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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